Job Description P39359 Confidence 96.57% Date Thu Jan 5 11:59:49 GMT 2012 Rank 83 Aligned Residues 213 % Identity 13% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	K	F	S	G	I	I	P	P	V	S	S	T	F	H	R	D	G	T	L	D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation															.	.	.	.	.																																																														.
Template Sequence		F	Y	K	E	N	A	N	V	A	Y	T	V	L	.	.	.	.	.	G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	.
Template Known Secondary structure		S		S	S	S								T	.	.	.	.	.	T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												.
Template Predicted Secondary structure															.	.	.	.	.																																																														.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		A	V	T	I	V	D	G	R	V	P	V	L	I	G	V	G	S	P	S	T	.	.	D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y	N	F	P	D	L	T	G
Query Conservation																						.	.
Alig confidence		.	.	.																		.	.																					.	.																			.	.	.	.												.	.	.
Template Conservation		.	.	.																																								.	.																			.	.	.	.												.	.	.
Template Sequence		.	.	.	R	I	K	T	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	P	E	L	S	F	E	E	S	D	D	L	I	K	E	C	E	R	Y	.	.	.	.	N	I	A	L	I	T	L	V	S	V	T	.	.	.
Template Known Secondary structure		.	.	.	T				S	S																										T	T							.	.	T	T			G	G	G												.	.	.	.	T									T	T	.	.	.
Template Predicted Secondary structure		.	.	.																																								.	.																			.	.	.	.												.	.	.
Template SS confidence
					81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																											.	.
Query SS confidence																												.	.	.	.	.	.	.																											.	.
Query Sequence		Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	E	N	I	V	G	I	K	D	T	I	D	.	.	.	.	.	.	.	S	V	G	H	L	R	T	M	I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D	.	.	D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A
Query Conservation																												.	.	.	.	.	.	.																											.	.
Alig confidence		.	.																									.	.	.	.	.	.	.																											.	.
Template Conservation		.	.
Template Sequence		.	.	T	P	K	E	R	V	K	K	L	V	K	H	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	D	K	V	K	E	I	R	S	F	T	N	L	P	I	F	V	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S
Template Known Secondary structure		.	.	S										T	T			S								S		S	S																			T	T			S						S	S			S	S							T	T	T	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	G	D	L	A	T	A	A	T	L	N	K	K	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	V	K	C	F	K	Q	G	N	L	D	I	I	X	K	D	I	E	E	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.					T	T	S	S												T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions