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Job DescriptionP39359
Confidence100.00%DateThu Jan 5 11:59:49 GMT 2012
Rank22Aligned Residues288
% Identity25%Templatec3lciA_
PDB info PDB header:lyaseChain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  KFSGIIPPVSSTFHRDGTLDKKAMREVADFLINKGVDGLFYLGTGGEFSQMNTAQRMALAEEAVTIVDGRVPVLIGVGSP
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Template Sequence  NLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCV
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   83......90.........100.........110.........120......... 130.........140.........150.........160.
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Query Sequence  STDEAVKLAQHAQAYGADGIVAINPYYWKVAPRNLDDYYQQIARSVT. LPVILYNFPDLTGQDLTPETVTRLALQNENIV
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Template Sequence  STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV. TLPGVG
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   84.....90.........100.........110.........120.........130.........140.........150...... ...160..
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  GIKDTIDSVGHLRTMINTVKSVRPSFSVFCGYDDHLLNTMLLGGDGAITASANFAPELSVGIYRAWREGDLATAATLNKK
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Template Sequence  ALKQTSGDLYQMEQIRRE. . . . HPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTE
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   163......170.........180 .........190.........200.........210.........220.........230........
 
   242.......250.........260.........270.........280.........290......
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Query Sequence  LLQLPAIYALETPFVSLIKYSMQCVGLPVETYCLPPILEASEEAKDKVHVLLTAQ
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Template Sequence  CNKVIDLLI. KTGWFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQL
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   239240....... ..250.........260.........270.........280.........290..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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