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Job DescriptionP39359
Confidence100.00%DateThu Jan 5 11:59:49 GMT 2012
Rank20Aligned Residues288
% Identity31%Templatec3eb2A_
PDB info PDB header:lyaseChain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
Resolution2.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  KFSGIIPPVSSTFHRDGTLDKKAMREVADFLINKGVDGLFYLGTGGEFSQMNTAQRMALAEEAVTIVDGRVPVLIGVGSP
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Template Sequence  DFHGVFPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAST
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B



B
TTS
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TT
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BBTTSGGGTGGG

TTSS
BS
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  STDEAVKLAQHAQAYGADGIVAINPYYWKVAPRNLDDYYQQIARSVTLPVILYNFPDLTGQDLTPETVTRLALQNENIVG
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Template Sequence  SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA. EHPRIRY
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   84.....90.........100.........110.........120.........130.........140.........150..... ....160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  IKDTIDSVGHLRTMINTVKSVRPSFSVFCGYDDHLLNTMLLGGDGAITASANFAPELSVGIYRAWREGDLATAATLNKKL
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Template Sequence  IKDASTNTGRLLSIINRC. . . GDALQVFSASAHIPAAVMLIGGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKL
Template Known Secondary structure 
SS
...GGGS
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TT

GGGGT
TT
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   163......170.........180 .........190.........200.........210.........220.........230.........
 
   243......250.........260.........270.........280.........290......
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Query Sequence  LQLPAIYALETPFVSLIKYSMQCVGLPVETYCLPPILEASEEAKDKVHVLLTAQ
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Template Sequence  WRVNEAFA. KFNLAACIKAGLALQGYD. VGDPIPPQAALTAEERKAVEKVLAEI
Template Known Secondary structure  TT.TS
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   240....... ..250.........260..... ....270.........280.........290.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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