Job Description P39359 Confidence 87.70% Date Thu Jan 5 11:59:49 GMT 2012 Rank 252 Aligned Residues 208 % Identity 8% Template c3e3mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi Resolution 1.60 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	G	V	G	S	P	S	T	D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	.	D
Query Conservation																																																																																.
Alig confidence																																																						.																										.
Template Conservation																																																						.
Template Sequence		S	P	E	R	E	E	Q	L	V	E	T	M	L	R	R	R	P	E	A	M	V	L	S	Y	D	G	H	T	E	Q	T	I	R	L	L	Q	R	A	S	I	P	I	V	E	I	W	E	K	P	A	H	P	.	I	G	H	T	V	G	F	S	N	E	R	A	A	Y	D	M	T	N	A	L	L	A	R	G	F	R	K
Template Known Secondary structure																T			S							S															S						S	S			S	S		.	S	S																					T	T			S
Template Predicted Secondary structure																																																						.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.
Predicted Secondary structure																																		.	.																																									.	.
Query SS confidence																																		.	.																																									.	.
Query Sequence		G	I	V	A	I	N	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	.	.	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	E	N	I	V	G	I	K	D	T	I	D	S	V	G	H	.	.	L	R	T	M
Query Conservation																																		.	.																																									.	.
Alig confidence																																		.	.																																									.	.
Template Conservation
Template Sequence		I	V	F	L	G	E	K	D	D	D	W	T	R	G	A	A	R	R	A	G	F	K	R	A	M	R	E	A	G	L	N	P	D	Q	E	I	R	L	G	A	P	P	L	S	I	E	D	G	V	A	A	A	E	L	I	L	Q	E	Y	P	D	T	D	C	I	F	C	V	S	D	M	P	A	F	G	L	L	S	R	L
Template Known Secondary structure								S	S		T	T	S																T	T	S		S							S		S	S																		T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D	D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A	N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	G	D
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		K	S	I	G	V	A	V	P	E	Q	V	S	V	V	G	F	G	N	F	E	V	S	R	F	A	S	P	E	I	S	.	T	V	R	V	D	P	I	A	I	G	R	E	T	G	S	L	I	L	R	L	L	D	A	Q
Template Known Secondary structure					T			T	T	T	T						S	S								S	S	S			B	.																					T
Template Predicted Secondary structure																																.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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