Job Description P39359 Confidence 53.18% Date Thu Jan 5 11:59:49 GMT 2012 Rank 484 Aligned Residues 158 % Identity 12% Template c3dfhC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	.	G	V	G	S	P	S	T	D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D
Query Conservation																																																										.
Alig confidence																									.	.																																.
Template Conservation																									.	.
Template Sequence		T	M	E	G	I	Y	D	L	V	E	G	F	L	E	K	G	Y	K	H	I	R	C	Q	.	.	L	G	F	D	Q	D	Q	Y	M	D	N	T	L	T	M	F	K	S	L	R	E	K	Y	G	N	Q	F	H	I	L	H	D	V	H	E	R	L	F	P	N	Q	A	I	Q	F	A	K	E	V	E	Q	Y	K	P	Y
Template Known Secondary structure		S														T	T								.	.																								T	T	S	S							T	T		S													G	G	G			S
Template Predicted Secondary structure																									.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.											.
Query SS confidence																																																											.											.
Query Sequence		G	I	V	A	I	N	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	.	E	N	I	V	G	I	K	D	T	I	.	D	S	V	G	H	L	R	T	M	I	N
Query Conservation																																																											.											.
Alig confidence												.	.	.	.	.	.	.																		.	.	.	.	.	.																		.											.
Template Conservation												.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		F	I	E	D	I	L	P	P	N	Q	.	.	.	.	.	.	.	T	E	W	L	D	N	I	R	S	Q	S	S	V	S	L	G	L	.	.	.	.	.	.	G	E	L	F	N	N	P	E	E	W	K	S	L	I	A	N	R	R	I	D	F	I	R	C	H	V	S	Q	I	G	G	I	T	P	A	L	K	L	G	H
Template Known Secondary structure							S		T	T		.	.	.	.	.	.	.	G	G	G						T	T								.	.	.	.	.	.		T	T			S										T	T			S						T	T	T	T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240								.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	Q	N	F	G	V	R	I	A	W	H	C	P	P	D
Template Known Secondary structure							T									T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions