Job Description P39359 Confidence 87.08% Date Thu Jan 5 11:59:49 GMT 2012 Rank 257 Aligned Residues 127 % Identity 18% Template c3cyvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism Resolution 2.80 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																								.	.	.	.												.	.	.	.	.
Query SS confidence																																								.	.	.	.												.	.	.	.	.
Query Sequence		K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	.	.	.	.	L	A	E	E	A	V	T	I	V	D	G	.	.	.	.	.	R	V	P	V	L	I	G	V	G	S	P	S	T	D	E	A	V	K	L	A	Q	H
Query Conservation																																								.	.	.	.												.	.	.	.	.
Alig confidence																													.	.										.	.	.	.												.	.	.	.	.													.	.	.	.	.
Template Conservation																													.	.																																										.	.	.	.	.
Template Sequence		A	K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	.	.	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	.	.	.	.	.	Q	W	L	E	A
Template Known Secondary structure															T	T		S							T	T	G	G	.	.	G	S									T											S		S			T	T										T	T	T	T	.	.	.	.	.	T	T
Template Predicted Secondary structure																													.	.																																										.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.																							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		A	Q	A	Y	G	A	D	G	I	V	A	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	.	T	L	P	V	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		M	A	E	T	G	C	D	A	L	G	L	D	W	T	T	D	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	G	F	G	H	G	E	G	H	V	F	N	L	G	H	G	I	H	Q	D	V	P	P	E	H	A
Template Known Secondary structure				T	T	S		S						T	T	S										T	T	T	S						B		G	G	G	G	G	S														T	T	T	T	T	S	S				B		B	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		151	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	A	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	F	V	E	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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