Job Description P39359 Confidence 96.90% Date Thu Jan 5 11:59:49 GMT 2012 Rank 64 Aligned Residues 165 % Identity 16% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		G	I	I	P	P	V	S	S	T	F	H	R	D	G	T	L	D	K	K	A	M	.	.	.	.	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	G	V	G	S
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																				.	.	.	.	.	.																		.
Template Conservation																																														.	.	.	.	.	.																		.
Template Sequence		G	D	I	G	P	T	G	E	L	P	Y	P	L	G	S	T	L	F	E	E	F	Y	E	N	F	R	E	T	V	E	I	M	V	E	E	G	V	D	G	I	I	F	E	T	.	.	.	.	.	.	F	S	D	I	L	E	L	K	A	A	V	L	A	A	R	E	V	.	S	R	D	V	F	L	I	A	H	M	T	F
Template Known Secondary structure								S			B	T	T	T	S	S	B																				T		S							.	.	.	.	.	.																		.		S	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.																		.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.
		82	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.
Predicted Secondary structure								.	.	.	.	.	.																																																															.	.	.	.
Query SS confidence								.	.	.	.	.	.																																																															.	.	.	.
Query Sequence		P	S	T	D	E	A	.	.	.	.	.	.	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	.	.	.	.	V	T
Query Conservation								.	.	.	.	.	.																																																															.	.	.	.
Alig confidence								.	.	.	.	.	.																						.	.	.	.																											.	.	.									.	.	.	.
Template Conservation																																			.	.	.	.																											.	.	.
Template Sequence		D	E	K	G	R	S	L	T	G	T	D	P	A	N	F	A	I	T	F	D	E	L	D	I	D	A	L	G	I	N	C	S	L	.	.	.	.	G	P	E	E	I	L	P	I	F	Q	E	L	S	Q	Y	T	D	K	F	L	V	V	E	P	N	A	.	.	.	G	Y	P	L	K	P	H	D	F	A	V	H	I	D
Template Known Secondary structure			T	T	S			T	T	S												T	S	S		S						S	S	S	.	.	.	.														T	T			S									.	.	.											T	T
Template Predicted Secondary structure																																			.	.	.	.																											.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	A	L	Q	N	E	N	I	V	G	I	K	D	T	I	D	S	V	G	H	L	R	T	M	I	N	T	V	K	S	V	R	P
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		S	Y	Y	E	L	G	V	N	I	F	G	G	C	C	G	T	T	P	.	E	H	V	K	L	F	R	K	V	L	G	N	R	K	P
Template Known Secondary structure					T	T	T		S						T	T				.												S
Template Predicted Secondary structure																				.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions