Job Description P39359 Confidence 100.00% Date Thu Jan 5 11:59:49 GMT 2012 Rank 36 Aligned Residues 282 % Identity 23% Template c3b4uB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 Resolution 1.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	F	S	G	I	I	P	P	V	S	S	T	F	H	R	D	G	T	L	D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	G	V	G	S
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		Q	K	F	.	G	L	S	A	A	L	T	T	P	F	K	T	D	G	T	V	D	I	D	A	M	I	A	H	A	R	R	C	L	S	N	G	C	D	S	V	T	L	F	G	T	T	G	E	G	C	S	V	G	S	R	E	R	Q	A	I	L	S	S	F	I	A	A	G	I	A	P	S	R	I	V	T	G	V	L	V
Template Known Secondary structure					.										B		T	T	S	S	B															T	T		S					S	S	T	T	T	T	G	G	G	S		T	T												T	T			G	G	G
Template Predicted Secondary structure					.
Template SS confidence
		3	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																.																			.	.	.
Query SS confidence																																.																			.	.	.
Query Sequence		P	S	T	D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	Y	Y	W	K	.	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	.	.	.	L	P	V	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N
Query Conservation																																.																			.	.	.
Alig confidence																																.																			.	.	.
Template Conservation
Template Sequence		D	S	I	E	D	A	A	D	Q	S	A	E	A	L	N	A	G	A	R	N	I	L	L	A	P	P	S	Y	F	K	N	V	S	D	D	G	L	F	A	W	F	S	A	V	F	S	K	I	G	K	D	A	R	D	I	L	V	Y	N	I	P	S	V	T	M	V	T	L	S	V	E	L	V	G	R	L	K	A	A	F
Template Known Secondary structure		S	S														T	T		S									S	S		S																			T	T														S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		158	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		E	N	.	I	V	G	I	K	D	T	I	D	S	V	G	H	L	R	T	M	I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D	D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A	N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	G	D	L	A	T	A	A
Query Conservation				.
Alig confidence				.																					.	.	.	.																																												.	.
Template Conservation																									.	.	.	.																																												.	.
Template Sequence		P	G	I	V	T	G	V	K	D	S	S	G	N	W	S	H	T	E	R	L	L	K	E	.	.	.	.	H	G	D	L	A	I	L	I	G	D	E	R	D	L	A	R	G	V	R	L	G	G	Q	G	A	I	S	G	V	A	N	F	L	T	Q	E	V	R	A	M	A	V	D	.	.	G	K	D	D	P	R	I	V
Template Known Secondary structure		T	T	T								S													.	.	.	.		T	T	S																T	T							S	G	G	G	T										T	T	.	.
Template Predicted Secondary structure																									.	.	.	.																																												.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	K	K	L	L	Q	L	P	A	I	Y	A	L	E	T	P	F	V	S	L	I	K	Y	S	M	Q	C	V	G	L	P	V	E	T	Y	C	L	P	P	I	L	E	A	S	E	E	A	K	D	K	V	H	V	L	L	T	A	Q	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		D	L	V	V	E	L	L	K	F	.	.	.	.	.	.	.	P	V	T	P	A	V	K	V	L	V	S	H	T	T	G	E	T	I	W	S	D	V	R	A	P	L	V	A	I	S	P	E	D	R	R	Q	I	E	G	A	F	D	A	L	F
Template Known Secondary structure							G	G	G	S	.	.	.	.	.	.	.																	G	G	G	G				T	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.								.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions