Job Description P39359 Confidence 74.54% Date Thu Jan 5 11:59:49 GMT 2012 Rank 346 Aligned Residues 204 % Identity 10% Template c2rgyA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum Resolution 2.05 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.												.	80	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	R	D	G	T	L	D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	G	.	.	.	.	.	.	.	.	.	.	.	V	G	S	P	S	T
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	C	G	E	S	T	P	R	E	Q	A	L	E	A	V	R	F	L	I	G	R	D	C	D	G	V	V	V	I	S	H	D	L	H	D	E	.	.	.	.	.	.	.	.	.	.	.	.	D	L	D	E	L	H	R	X	H	P	K	X	V	F	L	N	R	A	F	D	A	L	P	D	A	S	F	C	P	D	H	R
Template Known Secondary structure				S	S	S																T	T		S							S	S	S				.	.	.	.	.	.	.	.	.	.	.	.										S	S					S	S			T	T	S	G	G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.													.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	.	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	E	N	I	V	G	I
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		R	G	G	E	L	A	A	A	T	L	I	E	H	G	H	R	K	L	A	V	I	S	G	P	F	T	A	S	D	N	V	E	R	L	D	G	F	F	D	E	L	A	R	H	G	I	A	R	D	S	V	P	L	I	E	S	D	F	S	P	E	G	G	Y	A	A	T	C	Q	L	L	E	S	K	A	P	F	T	G	L
Template Known Secondary structure														T	T			S						S		T	T																	T	T	T			G	G	G	S							S	S															T				S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		164	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		K	D	T	I	D	S	V	G	H	L	R	.	T	M	I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D	D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A	N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	G	D
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		F	C	A	N	D	T	X	A	V	S	A	L	A	R	F	Q	Q	L	G	I	S	V	P	G	D	V	S	V	I	G	Y	D	D	D	Y	S	A	A	Y	A	A	P	A	L	T	S	V	H	I	P	T	A	E	L	T	Q	N	A	V	R	W	L	I	N	Q	C	Y	G	T
Template Known Secondary structure				S	S														T	T			T	T	T	T										T	T	S	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions