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Job DescriptionP39359
Confidence81.97%DateThu Jan 5 11:59:49 GMT 2012
Rank302Aligned Residues206
% Identity8%Templatec2qu7B_
PDB info PDB header:transcriptionChain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.........90.........100.
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Query Sequence  DKKAMREVADFLINKGVDGLFYLGTGGEFSQMNTAQRMALAEEAVTIVDGRVPVLIGVGSPSTDEAVKLAQHAQAYGADG
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Template Sequence  NEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREWLKIPIMTLDRELESTSLP. . . SITVDNEEAAYIATKRVLESTCKE
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   104.....110.........120.........130.........140.........150...... ...160.........170.........180
 
   102.......110.........120.........130.. .......140....... ..150.........160.........170....
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Query Sequence  IVAINPYYWKVAPRNLDDYYQQIARSVTLPV. . . . . ILYNFPDLTGQDLTP. . ETVTRLALQNENIVGIKDTIDSVGHLR
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Template Sequence  VGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQ
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   181........190.........200.........210.........220.........230.........240.........250.........260
 
   175....180.........190.........200.........210.........220.........230.
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Query Sequence  TMINTVKSVRPSFSVFCGYDDHLLNTMLLGGDGAITASANFAPELSVGIYRAWREGD
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Template Sequence  AIKESEKEIKKDVIIVGFDDSYWN. EIYTPKLTVISQPVKEMGQVAAKMIYKLIKGK
Template Known Secondary structure  SS

BTTTBS

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   261........270.........280.... .....290.........300.........310......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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