Job Description P39359 Confidence 100.00% Date Thu Jan 5 11:59:49 GMT 2012 Rank 38 Aligned Residues 278 % Identity 33% Template c2pcqA_ PDB info PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthase; PDBTitle: crystal structure of putative dihydrodipicolinate synthase (ttha0737)2 from thermus thermophilus hb8 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	P	P	V	S	S	T	F	H	R	D	G	T	L	D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V	P	V	L	I	G	V	G	S	P	S	T	D	E
Query Conservation
Alig confidence																												.																																	.	.	.	.
Template Conservation																												.																																	.	.	.	.
Template Sequence		I	L	P	P	I	P	T	P	F	D	R	E	G	R	L	D	E	E	A	F	R	E	L	A	Q	A	.	L	E	P	L	V	D	G	L	L	V	Y	G	S	N	G	E	G	V	H	L	T	P	E	E	R	A	R	G	L	R	A	L	.	.	.	.	R	P	R	K	P	F	L	V	G	L	X	E	E	T	L	P	Q
Template Known Secondary structure										B		T	T			B												.		G	G	G	S	S					T		T	T	T	T	G	G	G	S											T		.	.	.	.			S	S									S	S
Template Predicted Secondary structure																												.																																	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	.	Y	Y	W	K	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y	N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	E	N	I	V	G	I	K	D
Query Conservation																							.
Alig confidence																							.																				.	.																											.
Template Conservation																																											.	.																											.
Template Sequence		A	E	G	A	L	L	E	A	K	A	A	G	A	X	A	L	L	A	T	P	P	R	Y	Y	H	G	S	L	G	A	G	L	L	R	Y	Y	E	A	L	A	E	.	.	K	X	P	L	F	L	Y	H	V	P	Q	N	T	K	V	D	L	P	L	E	A	V	E	A	L	A	.	P	H	P	N	V	L	G	I	K	D
Template Known Secondary structure													T		S									T	T	G	G	G	T	T	T												.	.		S																								T	.	T	S	T	T
Template Predicted Secondary structure																																											.	.																											.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	D	S	V	G	H	L	R	T	M	I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D	D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A	N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	G	D	L	A	T	A	A	T	L	N	K	K	L	L	Q	L
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		S	S	G	D	L	S	R	I	A	F	Y	Q	A	R	.	.	.	.	L	Q	E	F	R	V	Y	T	G	H	A	P	T	F	L	G	A	L	A	L	G	A	E	G	G	I	L	A	A	A	N	L	A	P	R	A	Y	R	A	L	L	D	H	F	R	E	G	R	L	A	E	A	Q	E	L	Q	K	K	L	F	P	L
Template Known Secondary structure			S													.	.	.	.		S	S								G	G	G							T	T							G	G	G	G	T														T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		P	A	I	Y	A	L	E	T	P	F	V	S	L	I	K	Y	S	M	Q	C	V	G	L	P	V	E	T	Y	C	L	P	P	I	L	E	A	S	E	E	A	K	D	.	.	K	V	H	V	L	L	T	A	Q	G	I	L
Query Conservation																																												.	.
Alig confidence										.	.															.																		.	.
Template Conservation										.	.															.
Template Sequence		G	D	L	L	A	K	G	G	.	.	V	P	L	L	K	Q	A	L	R	H	L	G	L	P	.	A	G	Y	P	R	P	P	Y	P	A	E	S	P	L	W	E	R	F	L	P	V	L	E	G	L	K	E	E	G	W	V
Template Known Secondary structure										.	.											T	T			.						T	T	S		S	S		T	T														T	T
Template Predicted Secondary structure										.	.															.
Template SS confidence
		230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions