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Job DescriptionP39359
Confidence96.49%DateThu Jan 5 11:59:49 GMT 2012
Rank87Aligned Residues228
% Identity16%Templatec2d69B_
PDB info PDB header:lyaseChain: B: PDB Molecule:ribulose bisphosphate carboxylase; PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal)
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PPVSSTFHRDGTLDKKAMREVADFLINKGVDGLFYLGTGGEFSQMNTAQRMALAEEAVT. . . . IVDGRVPVLIGVGSPST
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Template Sequence  PLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG. PV
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   153......160.........170.........180.........190.........200.........210.........220......... 230.
 
   85....90.........100.........110......... 120.........130....
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Query Sequence  DEAVKLAQHAQAYGADGIVAINPYYWKVAPRNLDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YYQQIARSVTLPVIL
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Template Sequence  NIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIH
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   232.......240.........250.........260.........270.........280.........290.........300.........310.
 
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Query Sequence  YNFPDLTGQDLTPETVTRLALQN. . . . . . . ENIVGIKDTIDSVGHLRTMINTVKSVRPSFSVFCGYDDHLLNTMLLGGDG
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Template Sequence  TGTAV. GKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLF. . . GKDLVIQAGGG. . . . . . . VMGHPD
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   312.... ...320.........330.........340.........350.........360... ......370.... .....380
 
   208.210.........220.........230. ........240.........250..
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Query Sequence  AITASANFAPELSVGIYRAWREGD. LATAATLNKKLLQLPAIYALE
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Template Sequence  GPRAGA. . . . KALRDAIDAAIEGVDLDEKAKSSPELKKSLREVGLS
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   381..... ...390.........400.........410.........420..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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