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Job DescriptionP39359
Confidence96.95%DateThu Jan 5 11:59:49 GMT 2012
Rank63Aligned Residues227
% Identity14%Templatec1rcxH_
PDB info PDB header:lyase (carbon-carbon)Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60....... ..70.........80....
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Query Sequence  PPVSSTFHRDGTLDKKAMREVADFLINKGVDGLFYLGTGGEFSQMNTAQRMALAEEAVT. . . . IVDGRVPVLIGVGSPST
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Template Sequence  PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTC
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   85....90.........100...... ...110......... 120.........130....
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Query Sequence  DEAVKLAQHAQAYGADGIVAIN. . . . . . . . . . . . . . . . . . . . PYYWKVAPRNLDD. . . . . . . . . . YYQQIARSVTLPVIL
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Template Sequence  EDMMKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIH
Template Known Secondary structure  T
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   135....140.........150....... ..160.........170.........180.........190..
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Query Sequence  YNFPDLTGQDLTPETVTRLALQN. . . . . . . . . . . . . . . . . . . . . . ENIVGIKDTIDSVGHLRTMINTVKSVRPSFSVFCG
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Template Sequence  SGTVV. GKLEGERDITLGFVDLLRDDYTEKDRSRGIYFTQSWVSTPGVLPVASGGIHVWHMPALTEIF. . . GDDSVLQFG
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BGGGTB
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   328.330.. .......340.........350.........360.........370.........380.........390.... .....400...
 
   193......200.........210.........220.........230. ........240.........250
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Query Sequence  YDDHLLNTMLLGGDGAITASANFAPELSVGIYRAWREGD. . . . . . . . . . . . . LATAATLNKKLLQLPAIYA
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Template Sequence  GG. . . . . . . TLGHPWGNAPGA. . . . VANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEVWK
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   404. ....410....... ..420.........430.........440.........450.........460...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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