Job Description P39359 Confidence 84.37% Date Thu Jan 5 11:59:49 GMT 2012 Rank 280 Aligned Residues 125 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																																		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	D	G	R	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																																														.
Template Sequence		S	S	M	I	R	R	A	F	E	A	G	W	G	F	A	L	T	K	T	F	S	L	D	K	D	I	V	T	N	V	S	P	R	I	V	R	G	T	T	S	G	P	M	Y	G	P	G	Q	S	S	F	L	N	I	E	L	I	S	E	K	T	A	A	Y	W	C	Q	S	V	T	E	L	K	A	D	F	.	P	D	N
Template Known Secondary structure												T		S							B			G	G	G						S	S							T	T		S			S	S			S								S		S	S																	.	T	T	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.		.	.	.
		74	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.												.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure											.																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	L	I	G	V	G	S	P	.	S	T	D	E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	P	Y	Y	W	K	.	.	.	.	.	.	.	.	.	.	.	V	A	P	R	N	L	D	D	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y	N	F	P	D	L	T
Query Conservation											.																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	N	V	T
Template Known Secondary structure											S															T	T		S										S	S	G	G	G	G	T		T																						S	S								S		S	S
Template Predicted Secondary structure
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		D	.	.	.	.	I	V	S	I	A	R	A	A	K	E
Template Known Secondary structure			.	.	.	.
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		716					.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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