Job Description P31697 Confidence 92.04% Date Thu Jan 5 11:48:40 GMT 2012 Rank 22 Aligned Residues 87 % Identity 13% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		38	.	40	.	.		.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		V	A	L	G	A	.	T	R	V	I	Y	P	A	.	.	.	G	Q	K	Q	E	Q	L	A	V	T	N	N	D	E	N	S	T	Y	L	I	Q	S	W	V	E	N	A	D	G	V	K	D	G	R	F	I	V	T	P	P	L	F	A	M	K	G	K	K	E	N	T	L	R	I	L	D	A	T	N	N	Q	L	P	Q
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.																.													.	.	.	.	.
Template Conservation																																	.													.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	D	R	.	K	V	C	F	K	V	K	T	T	A	P	R	.	.	.	.	.	R	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L	Q	P	F	D	Y	D	P	N
Template Known Secondary structure		S				S	S	S						S			S	S												S	S	S	.									S		G	G	.	.	.	.	.	G					S	S						T	T																T	T
Template Predicted Secondary structure																																	.													.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		114	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		D	R	E	.	S	L	F	W	M	N	V	K	A	I	P	S	M	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		E	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions