Job Description P37643 Confidence 3.83% Date Thu Jan 5 11:56:15 GMT 2012 Rank 13 Aligned Residues 427 % Identity 9% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	E	Y	T	P	I	N	S	R	N	K	V	L	V	A	S	L	I	G	T	A	I	E	F	F	D	F	Y	I	Y	A	T	A	A	V	I	V	F	P	H	I	F	F	P	Q	G	D	P	T	A	A	T	L	Q	S	L	A	T	F	A	I	A	F	V	A	R	P	I	G	S	A	V	F	G	H	F	G	D	R
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		E	N	S	V	H	R	Y	K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	.	.	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L
Template Known Secondary structure			T	T																																								.	.	T	T	T	T	T	T																								G	G	G		T	T	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		91	.	.												.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	R	.	.	.	.	.	.	.	.	.	.	.	K	A	T	L	V	A	S	L	L	T	M	G	I	S	T	V	V	I	G	L	L	P	G	Y	A	T	I	G	I	F	A	P	L	L	L	A	L	A	R	F	G	Q	G	L	G	L	G	G	E	W	G	G	A	A	L	L	A	T	E	N	A	P	P	R	K	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L
Template Known Secondary structure			S	S	S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	G	S	F	P	Q	L	G	A	P	I	G	F	F	F	A	N	G	T	F	L	L	L	S	W	L	L	T	D	E	Q	F	M	S	W	G	W	R	V	P	F	I	F	S	A	V	L	V	I	I	G	L	Y	V	R	V	S	L	H	E	S	P	V	F	E	K	V	A	K	A	K	K	Q	V	K	I	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I
Template Known Secondary structure																									T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	L	L	T	K	H	V	R	V	T	V	L	G	T	F	I	M	L	A	T	Y	T	L	F	Y	I	M	T	V	Y	S	M	T	F	S	T	A	A	A	P	V	G	L	G	L	P	R	N	E	V	L	W	M	L	M	M	A	V	I	G	F	G	V	M	V	P	V	A	G	L	L	A	D	A	F	G	R	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N
Template Known Secondary structure		T	T																									T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.								.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		S	M	V	I	I	T	T	L	I	I	L	F	A	L	F	A	F	N	P	L	L	G	S	G	.	.	.	.	.	.	.	N	P	I	L	V	F	A	F	L	L	L	G	L	S	L	M	G	L	T	F	G	P	M	G	A	L	L	P	E	L	F	P	T	E	V	R	Y	T	G	A	S	F	S	Y	N	V	A	S	I
Query Conservation																										.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W
Template Known Secondary structure																												T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.						.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		L	G	A	S	V	A	P	Y	I	A	A	W	L	Q	.	.	.	.	.	T	N	Y	G	L	G	A	V	G	L	Y	L	A	A	M	A	G	L	T	L	I	A	L	L	L	T	H	E	T	R	H	Q	S
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S
Template Known Secondary structure																S	S	S			S																					T	G	G	G	S	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.