Job Description P37643 Confidence 99.95% Date Thu Jan 5 11:56:15 GMT 2012 Rank 4 Aligned Residues 370 % Identity 14% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	A	S	L	I	G	T	A	I	E	F	F	D	F	Y	I	Y	A	T	A	A	V	I	V	F	P	H	I	F	F	P	Q	G	D	P	T	A	A	T	L	Q	S	L	A	T	F	A	I	A	F	V	A	R	P	I	G	S	A	V	F	G	H	F	G	D	R	V	G	R	K	A	T	L	V	A	S	L	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		L	L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	.	.	.	.	.	.	.	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S
Template Known Secondary structure																													T	T	S	S	S	T	T						.	.	.	.	.	.	.														T	T						T	T	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	G	I	S	T	V	V	I	G	L	L	P	G	Y	A	T	I	G	I	F	A	P	L	L	L	A	L	A	R	F	G	Q	G	L	G	L	G	G	E	W	G	G	A	A	L	L	A	T	E	N	A	P	P	R	K	R	A	L	Y	G	S	F	P	Q	L	G	A	P	I	G	F	F	F	A	N	G	T	F	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G
Template Known Secondary structure																			.	.	.	.	.	.	.	.																													T	S	S			S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	W	L	L	T	D	E	Q	F	M	S	W	G	W	R	V	P	F	I	F	S	A	V	L	V	I	I	G	L	Y	V	R	V	S	L	H	E	S	P	V	F	E	K	V	A	K	A	K	K	Q	V	K	I	P	L	G	T	L	L	T	K	H	V	R	V	T	V	L	G	T	F	I	M	L	A	T	Y	T
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		L	L	D	T	M	W	.	.	.	.	.	.	.	.	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A
Template Known Secondary structure			S	S				.	.	.	.	.	.	.	.																							S	S				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Y	I	M	T	V	Y	S	M	T	F	S	T	A	A	A	P	V	G	L	G	L	P	R	N	E	V	L	W	M	L	M	M	A	V	I	G	F	G	V	M	V	P	V	A	G	L	L	A	D	A	F	G	R	R	K	S	M	V	I	I	T	T	L	I	I	L	F	A	L	F	A	F	N	P	L	L	G	S
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	.	.	.	.	.	.	.	.	.	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V
Template Known Secondary structure							S		S	S																	T										.	.	.	.	.	.	.	.	.					T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260										.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	P	I	L	V	F	A	F	L	L	L	G	L	S	L	M	G	L	T	F	G	P	M	G	A	L	L	P	E	L	F	P	T	E	V	R	Y	T	G	A	S	F	S	Y	N	V	A	S	I	L	G	A	S	V	A	P	Y	I	A	A	W	L	Q	T	N	Y	G	L	G	A	V	G	L	Y	L	A	A	M	A
Query Conservation
Alig confidence																																			.																.
Template Conservation																																			.																.
Template Sequence		M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	.	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L
Template Known Secondary structure																					T	S	S	T	T						T				.																.							S	T	T		T
Template Predicted Secondary structure																																			.																.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		423	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	V	L
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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