Job Description P0AAD2 Confidence 6.78% Date Thu Jan 5 11:12:35 GMT 2012 Rank 13 Aligned Residues 162 % Identity 10% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Y	Y	G	K	D	P	K	T	I	V	K	C	L	V	Y	G	T	L	M	A	L	A	L	Y	T	I	W	L	L	A	T	M	G	N	I	P	R	P	E	F	I	G	I	A	E	K	G	G	N	I	D	V	L	V	Q	A	L	S	G	V	L	N	S	R	S	L	D	L	L	L	V	V	F	S	N	F	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	F	V	R	L	P	S	S	F	L	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I
Template Known Secondary structure						S	S		B		S	S					T	T																			T	T		S	S	S					G	G	G																T	T			B
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.												.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.									340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		A	S	S	F	L	G	V	T	L	G	L	F	D	Y	L	A	D	L	F	G	F	D	D	.	.	.	.	.	.	.	.	.	.	.	S	A	V	G	R	L	K	T	A	L	L	T	F	A	P	P	V	V	G	G	L	L	.	.	.	.	.	.	.	.	F	P	N	G	F	L	Y	A	I	G	Y	A	G	L	A	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T
Template Known Secondary structure																			T	T	S	S				T	T									T	T																				T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		936	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	W	A	A	I	V	P	A	L	L	A	R	A	S	R	K	R	F	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure		T	T	T	T	S	S	S	S	S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		1016	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions