Job Description P0AAD2 Confidence 100.00% Date Thu Jan 5 11:12:35 GMT 2012 Rank 2 Aligned Residues 373 % Identity 12% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	T	S	P	S	L	L	G	G	V	V	I	I	G	G	T	I	I	G	A	G	M	F	S	L	P	V	V	M	S	G	A	W	F	F	W	S	M	A	A	L	I	F	T	W	F	C	M	L	H	S	G	L	M	I	L	E	A	N	L	N	Y	R	I	G	S	S	F	D	T	I	T	K	D	L	L	G	K	G
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		D	A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	.	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F
Template Known Secondary structure				S	S													T	T	S	S	S	S	T	T	T					T	T	S	S			.			S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	V	V	N	G	I	S	I	A	F	V	L	Y	I	L	T	Y	A	Y	I	S	A	S	G	S	I	L	H	H	T	F	A	E	M	S	L	N	V	P	A	R	A	A	G	F	G	F	A	L	L	V	A	F	V	V	W	L	S	T	K	A	V	S	R	M	T	A	I	V	L	G	A	K	V	I	T	F	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G
Template Known Secondary structure												T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	F	G	S	L	L	G	H	V	Q	P	A	T	L	F	N	V	A	E	S	N	A	S	Y	.	A	P	Y	L	L	M	T	L	P	F	C	L	A	S	F	G	Y	H	G	N	V	P	S	L	M	K	Y	Y	G	K	D	P	K	T	I	V	K	C	L	V	Y	G	T	L	M	A	L	A	L	Y	T	I	W	L	L
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T
Template Known Secondary structure									S			S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	M	G	N	I	P	R	P	E	F	I	G	I	A	E	K	G	G	N	I	D	V	L	V	Q	A	L	S	G	V	L	N	S	R	S	L	D	L	L	L	V	V	F	S	N	F	A	V	A	S	S	F	L	G	V	T	L	G	L	F	D	Y	L	A	D	L	F	G	F	D	D	S	A	V	G	R	L	K	T
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	M	G	M	I	P	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G
Template Known Secondary structure					S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																T	T	S	S	T	T	T	S	S		S									S	S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.																			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		A	L	L	T	F	A	P	P	V	V	G	G	L	L	F	P	N	G	F	L	Y	.	.	.	.	A	I	G	Y	A	G	L	A	A	T	I	W	A	A	I	V	P	A	L	L	A	R	A	S	R	K	R	F	G	S	P	K	F	R	V	W	G	G	K	P	M	I	A	L	I	L	V	F	G	V	G	N
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.
Template Conservation
Template Sequence		L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V
Template Known Secondary structure														T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions