Job Description P0AAD2 Confidence 98.54% Date Thu Jan 5 11:12:35 GMT 2012 Rank 4 Aligned Residues 385 % Identity 9% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		T	S	P	S	L	L	G	G	V	V	I	I	G	G	T	I	I	G	A	G	.	M	F	S	L	P	V	V	M	S	G	A	W	F	F	W	S	M	A	A	L	I	F	T	W	F	C	M	L	H	S	G	L	M	I	L	E	A	N	L	N	Y	R	I	G	S	S	F	D	T	I	T	K	D	L	L	G	K	G	W
Query Conservation																						.
Alig confidence																						.														.																															.
Template Conservation																																				.																															.
Template Sequence		K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	.	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K	G	I	Y	.	T	I	P	E	F	V	E	K	R	F	N	K	K	L
Template Known Secondary structure		S																	S					T									T		G	.	G	G																		T							T	T			.	S									T
Template Predicted Secondary structure																																				.																															.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	V	N	G	I	S	I	A	F	V	L	Y	I	L	T	Y	A	Y	I	S	A	S	G	S	I	L	H	H	T	F	A	E	M	S	L	N	V	P	A	R	A	A	G	F	G	F	A	L	L	V	A	F	V	V	W	L	S	T	K	A	V	S	R	M	T	A	I	V	L	G	A	K	V	I	T	F	F	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G
Template Known Secondary structure																T																	T	T																	T	T				S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		168	.	170	.	.														.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	V	Q	P	A	T	L	F	N	V	A	E	S	N	A	S	Y	A	P	Y	L	L	M	T	L	P	F	C	L	A	S	F	G	Y	H	G	N	V	P	S	L	M	K	Y	Y	G	K	D	P	K	T	I	V	K	C	L	V	Y	G	T	L
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F
Template Known Secondary structure		T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.																				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	L	A	L	Y	T	I	W	L	L	A	T	M	G	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	P	E	F	I	G	I	A	E	K	G	G	N	I	D	V	L	V	Q	A	L	S	G	V	L	N	S	R	S	L	D	L	L	L	V	V	F	S	N	F	A	V	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S
Template Known Secondary structure						G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	F	L	G	V	T	L	G	L	F	D	Y	L	A	D	L	F	G	F	D	D	S	A	V	G	R	L	K	T	A	L	L	T	F	A	P	P	V	V	G	G	L	L	F	P	N	G	F	L	Y	A	I	G	Y	A	G	L	A	A	T	I	W	A	A	I	V	P	A	L	L	A	R	A	S	R	K	R	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T
Template Known Secondary structure										T							S		S		S	S																					G	G	G	G	G	G		S											T	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	K	F	R	V	W	G	G	K	P	M	I	A	L	I	L	V	F	G	V	G	N	A	L	V	H	I	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.																				T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.