Job Description P25553 Confidence 62.52% Date Thu Jan 5 11:42:11 GMT 2012 Rank 48 Aligned Residues 197 % Identity 16% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	F	L	I	A	R	K	M	A	P	A	L	L	T	G	N	T	I	V	I	K	P	S	E	F	T	P	N	N	A	I	A	F	A	K	I	V	D	E	I	G	L	P	R	G	V	F	N	L	V	L	G	R	G	E	T	V	G	Q	E	L	A	G	N	P	K	V	A	M	V	S	M	T	G	S	V	S	A	G
Query Conservation
Alig confidence																																				.	.	.	.							.	.	.	.	.
Template Conservation																																				.	.	.	.							.	.	.	.	.
Template Sequence		P	M	V	T	A	A	T	S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	L	S	A	R	V	A	.	.	.	.	L	S	A	G	F	D	.	.	.	.	.	A	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A
Template Known Secondary structure																S	T	T										S								.	.	.	.		T	T	T		S	.	.	.	.	.														T	S	S		S	S	S
Template Predicted Secondary structure																																				.	.	.	.							.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	I	M	A	T	A	A	K	N	I	T	K	V	C	L	E	L	G	G	K	A	P	A	I	V	M	D	D	A	D	L	E	L	A	V	K	A	I	V	D	S	R	V	I	N	S	G	Q	V	C	N	C	A	E	R	V	Y	V	Q	K	G	I	Y	D	Q	F	V	N	R	L	G	E	A	M	Q	A	V	Q	F
Query Conservation
Alig confidence																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	M	I	S	N	I	S	P	S	T	P	V	I	A	D	A	D	T	G	Y	G	G	P	I	.	.	.	.	.	.	M	V	A	R	T	T	E	Q	Y	S	R	S	G	V	A	A	.	.	.	.	.	.	.	.	.	.	F	H	I	E	D	Q	V	Q	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	T	T	S							T	T		S	S	S			.	.	.	.	.	.												T	T				.	.	.	.	.	.	.	.	.	.						B					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	P	A	E	R	N	D	I	A	M	G	P	L	I	N	A	A	A	L	E	R	V	E	Q	K	V	A	R	A	V	E	E	G	A	R	V	A	F	G	G	K	A	V	E	G	K	G	Y	Y	Y	P	P	T	L	L	L	D	V	R	Q	E	M	S	I	M	H	E	E	T	F	G	P	V	L	P	V	V	A	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	I	V	V	I	A	R	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		B																					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																																						.	.	.	.	.	.	160	.	.
		395	.	.						.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.				.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																				.	.	.
Query SS confidence					.	.	.	.	.																				.	.	.
Query Sequence		D	T	L	.	.	.	.	.	E	D	A	I	S	M	A	N	D	S	D	Y	G	L	T	S	S	I	Y	.	.	.	T	Q	N	L	N	V	A	M	K	A	I	K	G	L	K	F	G	E	T	Y	I	N
Query Conservation					.	.	.	.	.																				.	.	.
Alig confidence					.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		D	S	L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	G	A	D	V	G	F	L	E	G	I	T	S	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N
Template Known Secondary structure																							T		S					T	T														T	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions