Job Description P25553 Confidence 100.00% Date Thu Jan 5 11:42:11 GMT 2012 Rank 2 Aligned Residues 474 % Identity 36% Template c3ed6B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Resolution 1.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		P	V	Q	H	P	M	Y	I	D	G	Q	F	V	T	W	R	G	D	A	W	I	D	V	V	N	P	A	T	E	A	V	I	S	R	I	P	D	G	Q	A	E	D	A	R	K	A	I	D	A	A	E	R	A	Q	P	E	.	.	W	E	A	L	P	A	I	E	R	A	S	W	L	R	K	I	S	A	G	I	R	E
Query Conservation																																																										.	.
Alig confidence																																																										.	.
Template Conservation
Template Sequence		H	L	S	Q	R	Q	Y	I	D	G	E	W	V	E	S	A	N	K	N	T	R	D	I	I	N	P	Y	N	Q	E	V	I	F	T	V	S	E	G	T	K	E	D	A	E	R	A	I	L	A	A	R	R	A	F	E	S	G	E	W	S	Q	E	T	A	E	T	R	G	K	K	V	R	A	I	A	D	K	I	K	E
Template Known Secondary structure		T				S				T	T						T	T									T	T	T	T																												T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	S	E	I	S	A	L	I	V	E	E	G	G	K	I	Q	Q	L	A	E	V	E	V	A	F	T	A	D	Y	I	D	Y	M	A	E	W	A	R	R	Y	E	G	E	I	I	Q	S	D	R	P	G	E	N	I	L	L	F	K	R	A	L	G	V	T	T	G	I	L	P	W	N	F	P	F	F	L	I	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	E	A	L	A	R	L	E	T	L	D	T	G	K	T	L	E	E	S	Y	A	D	M	D	D	I	H	N	V	F	M	Y	F	A	G	L	A	D	K	D	G	G	E	M	I	D	S	P	I	P	D	T	E	S	K	I	V	K	E	P	V	G	V	V	T	Q	I	T	P	W	N	Y	P	L	L	Q	A	S	W
Template Known Secondary structure		T																																					T	T	S									S	S	T	T																			S	S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	A	P	A	L	L	T	G	N	T	I	V	I	K	P	S	E	F	T	P	N	N	A	I	A	F	A	K	I	V	D	E	I	G	L	P	R	G	V	F	N	L	V	L	G	R	G	E	T	V	G	Q	E	L	A	G	N	P	K	V	A	M	V	S	M	T	G	S	V	S	A	G	E	K	I	M	A	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	A	P	A	L	A	T	G	C	S	L	V	M	K	P	S	E	I	T	P	L	T	T	I	R	V	F	E	L	M	E	E	V	G	F	P	K	G	T	I	N	L	I	L	G	A	G	S	E	V	G	D	V	M	S	G	H	K	E	V	D	L	V	S	F	T	G	G	I	E	T	G	K	H	I	M	K	N	A
Template Known Secondary structure										T									T	T																			T	T	S						S			T	T									T	T		S						S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	I	T	K	V	C	L	E	L	G	G	K	A	P	A	I	V	M	D	D	A	D	L	E	L	A	V	K	A	I	V	D	S	R	V	I	N	S	G	Q	V	C	N	C	A	E	R	V	Y	V	Q	K	G	I	Y	D	Q	F	V	N	R	L	G	E	A	M	Q	A	V	Q	F	G	N	P	A	E	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	N	V	T	N	I	A	L	E	L	G	G	K	N	P	N	I	I	F	D	D	A	D	F	E	L	A	V	D	Q	A	L	N	G	G	Y	F	H	A	G	Q	V	C	S	A	G	S	R	I	L	V	Q	N	S	I	K	D	K	F	E	Q	A	L	I	D	R	V	K	K	I	K	L	G	N	G	F	D	A	D
Template Known Secondary structure			T	T	T																	T	T	S															G	G	G	G	T	S	T	T																								T	T			B			T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.					360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		D	I	A	M	G	P	L	I	N	A	A	A	L	E	R	V	E	Q	K	V	A	R	A	V	E	E	G	A	R	V	A	F	G	G	K	A	V	E	.	.	.	.	G	K	G	Y	Y	Y	P	P	T	L	L	L	D	V	R	Q	E	M	S	I	M	H	E	E	T	F	G	P	V	L	P	V	V	A	F	D	T	L
Query Conservation																																								.	.	.	.
Alig confidence		.																																						.	.	.	.
Template Conservation		.
Template Sequence		.	T	E	M	G	P	V	I	S	T	E	H	R	N	K	I	E	S	Y	M	D	V	A	K	A	E	G	A	T	I	A	V	G	G	K	R	P	D	R	D	D	L	K	D	G	L	F	F	E	P	T	V	I	T	N	C	D	T	S	M	R	I	V	Q	E	E	V	F	G	P	V	V	T	V	E	G	F	E	T	E
Template Known Secondary structure		.		S	B				S																			T								S					T	T	T	T	T	S										S			T	T	S					S				S	S								S	S
Template Predicted Secondary structure		.
Template SS confidence
			326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	A	I	S	M	A	N	D	S	D	Y	G	L	T	S	S	I	Y	T	Q	N	L	N	V	A	M	K	A	I	K	G	L	K	F	G	E	T	Y	I	N	R	E	N	F	E	A	M	Q	G	F	H	A	G	W	R	K	S	G	I	G	G	A	D	G	K	H	G	L	H	E	Y	L	Q	T	Q	V	V	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	A	I	Q	L	A	N	D	S	I	Y	G	L	A	G	A	V	F	S	K	D	I	G	K	A	Q	R	V	A	N	K	L	K	L	G	T	V	W	I	N	D	F	H	P	Y	F	A	Q	A	P	W	G	G	Y	K	Q	S	G	I	G	R	E	L	G	K	E	G	L	E	E	Y	L	V	S	K	H	I	L	T
Template Known Secondary structure									T		S	S			S							S												S			S					S		S					T	T	S		B			S	G	G	G			S		B	S							T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		478
Predicted Secondary structure
Query SS confidence
Query Sequence		Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		485