Job Description P25553 Confidence 42.24% Date Thu Jan 5 11:42:11 GMT 2012 Rank 55 Aligned Residues 227 % Identity 19% Template c2yvkA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																	.	.	.	.	.	.	.	60
Predicted Secondary structure																														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	V	P	V	Q	H	P	M	Y	I	D	G	Q	F	V	T	W	R	G	D	A	W	I	D	V	V	N	.	.	.	.	P	A	T	E	A	V	I	S	R	I	P	D	G	Q	A	E	D	A	R	K	A	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	R	A	Q	P	E	W
Query Conservation																														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.										.						.	.	.	.										.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.										.																			.	.	.
Template Sequence		M	T	H	S	F	A	V	P	.	.	.	.	.	R	S	V	E	W	K	E	T	A	.	I	T	I	L	N	Q	Q	K	L	P	D	E	T	E	Y	L	E	L	.	.	.	T	T	K	E	D	V	F	D	A	I	V	T	L	K	V	R	G	A	P	A	I	G	I	T	A	A	F	G	L	A	L	A	A	K	D	I
Template Known Secondary structure			G	G	G	G	G	S		.	.	.	.	.		S					S	S		.						G	G	G	T	T	T								.	.	.		S										T	T	S	S		S																	T	T
Template Predicted Secondary structure										.	.	.	.	.										.																			.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.						.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.											.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	L	P	A	I	E	R	A	S	W	L	R	K	I	S	A	G	I	R	E	R	A	.	.	.	.	.	.	.	.	.	.	S	E	I	S	A	L	I	V	E	E	G	G	K	I	Q	Q	L	A	E	V	E	V	A	F	T	A	D	Y	I	D	Y	M	A	E	W	A	R	R	Y	E	G	E	I	I	Q	S	D
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																										.	.
Template Sequence		E	T	D	N	V	T	E	F	R	R	R	L	E	D	I	K	Q	Y	L	N	S	S	R	P	T	A	I	N	L	S	W	A	L	E	R	L	S	H	S	V	.	.	E	N	A	I	S	V	N	E	A	K	T	N	L	V	H	E	A	I	Q	I	Q	V	E	D	E	E	T	C	R	L	I	G	Q	N	A	L	Q	L
Template Known Secondary structure				S																		T	T		S	S															T	.	.	T	T		S	S																															G	G	G
Template Predicted Secondary structure																																										.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		R	P	G	E	N	I	L	L	F	K	R	A	L	G	V	T	T	G	I	L	P	W	N	F	P	F	F	L	I	A	R	K	M	A	P	A	L	L	T	G	N	T	I	V	I	K	P	S	E	F	T	P	N	N	.	.	A	I	A	F	A	K	I	V	D	E	I	G	L	P	R	G	V	F	N	L	V	L	G	R
Query Conservation																																																								.	.
Alig confidence																							.	.	.	.	.																													.	.															.	.	.						.	.
Template Conservation																							.	.	.	.	.																																													.	.	.						.	.
Template Sequence		F	K	K	G	D	R	I	M	T	I	C	N	A	G	S	I	A	T	S	R	Y	.	.	.	.	.	G	T	A	L	A	P	F	Y	L	A	K	Q	K	D	L	G	L	H	I	Y	A	C	E	T	R	P	V	L	Q	G	S	R	L	T	A	W	E	L	M	Q	G	G	I	D	.	.	.	V	T	L	I	T	.	.
Template Known Secondary structure				T	T							S			S	T	T	T	S	S	S	S	.	.	.	.	.		S	T	T									T	T											T	T	T	T					T							T	T	T			.	.	.						.	.
Template Predicted Secondary structure																							.	.	.	.	.																																													.	.	.						.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.															.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	T	V	G	Q	E	L	A	G	N	P	K	V	A	M	V	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	V	S	A	G	E	K	I	M	A	T	A	A	K	N	I	T	K	V	C	L	E	L	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation		.																																						.	.	.	.
Template Sequence		.	D	S	M	A	A	H	T	M	K	E	K	Q	I	S	A	V	I	V	G	A	D	R	I	A	K	N	G	D	T	A	N	K	I	G	T	Y	G	.	.	.	.	L	A	I	L	A	N	A	F	D	I	P	F	F	V	A	A	P
Template Known Secondary structure		.	G	G	G								T	T									S				T	T							T	T				.	.	.	.								T	T
Template Predicted Secondary structure		.																																						.	.	.	.
Template SS confidence
			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions