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Job DescriptionP25553
Confidence100.00%DateThu Jan 5 11:42:11 GMT 2012
Rank9Aligned Residues471
% Identity32%Templatec2d4eB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  QHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASE
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Template Conservation       
 
            
  
 

  
         

  

  
  
   
   
   
   
   
  
      
Template Sequence  PALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADE
Template Known Secondary structure 
B
TT

TT

TTTT


S
T
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   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  ISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAP
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Template Sequence  LAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHAMEDRTFPVDRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAP
Template Known Secondary structure 


TTGGGTT


TTT




SSS
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  ALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAAKNI
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Template Sequence  ALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNAADHL
Template Known Secondary structure  TT



TTS
TT

TTS



TTT
TT

S
GGGT
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   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  TKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAM
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Template Conservation       



    

   

   

  

       

 
 
   
 
   
 
 
   
         
 
 
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Template Sequence  KRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHPLDPE. TEV
Template Known Secondary structure 






TTS
GGGG
STT


T

B

TTSTT.
SB
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   266...270.........280.........290.........300.........310.........320.........330.........340. ...
 
   326...330.........340.........350.........360. ........370.........380.........390.......
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Query Sequence  GPLINAAALERVEQKVARAVEEGARVAFGGKAVEGK. . . . . . . . GYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTL
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Template Conservation 



           
  
   

 

 

              
      
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Template Sequence  GPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGEN. HMKIAQEEIFGPVLVAIPFKDE
Template Known Secondary structure 


S
TT


SB

B
TTS
B
TTTT
B



T.TSS


SSSS
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   345....350.........360.........370.........380.........390.........400. ........410.........420...
 
   398.400.........410.........420.........430.........440.........450.........460.........470.......
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Query Sequence  EDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVYL
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Template Sequence  EEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRREGGTYALDFYTDLKTIAL
Template Known Secondary structure 
SS

S


S
SSSSS



TTS
B

SGGGB
S
BS
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   424.....430.........440.........450.........460.........470.........480.........490.........500...
 
   478
Predicted Secondary structure 
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Query Sequence  Q
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  P
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   504
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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