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Job DescriptionP0AER0
Confidence5.29%DateWed Jan 25 15:20:31 GMT 2012
Rank46Aligned Residues231
% Identity14%Templatec3klzE_
PDB info PDB header:membrane proteinChain: E: PDB Molecule:putative formate transporter 1; PDBTitle: pentameric formate channel with formate bound
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20. ........30.........40. ........50.........60.........70......
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Query Sequence  TSTLKGQCIAEFLGTGLL. IFFGVGCVAALKVAGASFGQ. . . . . . WEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALW
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Template Sequence  EGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSV. . LILVAKA
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TTT
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   23......30.........40.........50.........60.........70.........80.........90... ......100
 
   77..80.........90.........100.........110.........120.........130.........140.........150......
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Query Sequence  LFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVIT
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Template Sequence  . SGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHK. . . . . . . . LHHTFLQAFALGLMCN
Template Known Secondary structure  .TSS
TGGGTGGGTT........S


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   101........110.........120.........130.........140.........150..... ....160.........170.
 
   157..160.........170.........180.........190.........200... ..... .210.........220........
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Query Sequence  AILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMN. . . . PARDF. . . . GPKVFAWLAGWGNVAFTGGR
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Template Sequence  ILVCLAVWMTF. . . . . . SARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLN
Template Known Secondary structure  T......T
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   172.......180.. .......190.........200.........210.........220.........230.........240.....
 
   229230.........240.........250.
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Query Sequence  DIPYFLVPLFGPIVGAIVGAFAY
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Template Sequence  FVNFIVNNLIPVTLGNIVGGGVF
Template Known Secondary structure  T
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   246...250.........260........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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