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Job DescriptionP0AER0
Confidence100.00%DateWed Jan 25 15:20:31 GMT 2012
Rank11Aligned Residues239
% Identity31%Templatec3d9sB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  QTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFD
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Template Sequence  CSVAFLKAVFAEFLATLIFVFFGLGS. . ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQIS
Template Known Secondary structure  SST..TS

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   6...10.........20.........30. ........40.........50.........60.........70.........80...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  KRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGL
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Template Sequence  LLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLA. . . . . . . . . . . . . . . . . . VNALNNNTTQGQAMVVELILTFQLALC
Template Known Secondary structure  S
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   84.....90.........100.........110........ .120.........130.........140.....
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  ILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIV
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Template Sequence  IFASTDSRRTSPVGS. PALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVM. . . . . . . . . . . . NRFSPAHWVFWVGPIV
Template Known Secondary structure  T
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   146...150.........160 .........170.........180.........190...... ...200.........210..
 
   243......250.........260.........270....
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Query Sequence  GAIVGAFAYRKLIGRHLPCDICVVEEKETTTP
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Template Sequence  GAVLAAILYFYLLFPNSLSLSERVAIIKGTYE
Template Known Secondary structure  TTTS




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   213......220.........230.........240....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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