Job Description P0AER0 Confidence 100.00% Date Wed Jan 25 15:20:31 GMT 2012 Rank 4 Aligned Residues 225 % Identity 36% Template c2f2bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution Resolution 1.68 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	K	G	Q	C	I	A	E	F	L	G	T	G	L	L	I	F	F	G	V	G	C	V	A	A	L	K	V	A	G	A	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	W	E	I	S	V	I	W	G	L	G	V	A	M	A	I	Y	L	T	A	G	V	S	G	A	H	L	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	T	K	R	C	I	A	E	F	I	G	T	F	I	L	V	F	F	G	A	G	S	A	A	V	T	L	M	I	A	S	G	G	T	S	P	N	P	F	N	I	G	I	G	L	L	G	G	L	G	D	W	V	A	I	G	L	A	F	G	F	A	I	A	A	S	I	Y	A	L	G	N	I	S	G	C	H	I	N
Template Known Secondary structure																																	T	T				S	S	T	T			S	T	T	T	T	T	T																							T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	T	I	A	L	W	L	F	A	C	F	D	K	R	K	V	I	P	F	I	V	S	Q	V	A	G	A	F	C	A	A	A	L	V	Y	G	L	Y	Y	N	L	F	F	D	F	E	Q	T	H	H	I	V	R	G	S	V	E	S	V	D	L	A	G	T	F	S	T	Y	P	N	P	H	I	N	F	V	Q	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	V	T	I	G	L	W	S	V	K	K	F	P	G	R	E	V	V	P	Y	I	I	A	Q	L	L	G	A	A	F	G	S	F	I	F	L	Q	C	A	G	I	G	A	A	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	G	A	T	A	P	F	P	G	I	S	Y	W	Q	A
Template Known Secondary structure											T	T	S	S		G	G	G																									T					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G						T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	V	E	M	V	I	T	A	I	L	M	G	L	I	L	A	L	T	D	D	G	N	G	V	P	R	G	P	L	A	P	L	L	I	G	L	L	I	A	V	I	G	A	S	M	G	P	L	T	G	F	A	M	N	P	A	R	D	F	G	P	K	V	F	A	W	L	A	G	W	G	N	V	A	F	T	G	G	R
Query Conservation
Alig confidence																										.	.																																															.	.	.	.	.	.	.
Template Conservation																										.	.																																															.	.	.	.	.	.	.
Template Sequence		M	L	A	E	V	V	G	T	F	L	L	M	I	T	I	M	G	I	A	V	D	E	R	A	.	.	P	K	G	F	A	G	I	I	I	G	L	T	V	A	G	I	I	T	T	L	G	N	I	S	G	S	S	L	N	P	A	R	T	F	G	P	Y	L	N	D	M	I	F	A	G	T	.	.	.	.	.	.	.	D
Template Known Secondary structure																				T	T	S	T	T	S	.	.		T	T																																												.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.																																															.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.								.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	P	Y	F	L	V	P	L	F	G	P	I	V	G	A	I	V	G	A	F	A	Y	R	K	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	N	Y	Y	S	I	Y	V	I	G	P	I	V	G	A	V	L	A	A	L	T	Y	Q	Y	L	T
Template Known Secondary structure			G	G	G	T	T																					T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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