Job Description P0AER0 Confidence 100.00% Date Wed Jan 25 15:20:31 GMT 2012 Rank 8 Aligned Residues 227 % Identity 27% Template c1ymgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution Resolution 2.24 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	K	G	Q	C	I	A	E	F	L	G	T	G	L	L	I	F	F	G	V	G	C	V	A	A	L	K	V	A	G	A	S	F	G	Q	W	E	I	S	V	I	W	G	L	G	V	A	M	A	I	Y	L	T	A	G	V	S	G	A	H	L	N	P	A	V	T	I	A	L	W	L	F	A	C	F	D	K	R	K
Query Conservation
Alig confidence																													.	.	.
Template Conservation																													.	.	.
Template Sequence		S	F	W	R	A	I	C	A	E	F	F	A	S	L	F	Y	V	F	F	G	L	G	A	S	L	R	W	.	.	.	A	G	P	L	H	V	L	Q	V	A	L	A	F	G	L	A	L	A	T	L	V	Q	A	V	G	H	I	S	G	A	H	V	N	P	A	V	T	F	A	F	L	V	G	S	Q	M	S	L	L	R
Template Known Secondary structure		T	T																								S		.	.	.																									T	T	T	T					S										T	T	S	S
Template Predicted Secondary structure																													.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	P	F	I	V	S	Q	V	A	G	A	F	C	A	A	A	L	V	Y	G	L	Y	Y	N	L	F	F	D	F	E	Q	T	H	H	I	V	R	G	S	V	E	S	V	D	L	A	G	T	F	S	T	Y	P	N	P	H	I	N	F	V	Q	A	F	A	V	E	M	V	I	T	A	I	L	M	G	L	I	L	A
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	C	Y	M	V	A	Q	L	L	G	A	V	A	G	A	A	V	L	Y	S	V	T	P	P	A	V	R	G	N	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	T	L	H	P	G	V	S	V	G	Q	A	T	I	V	E	I	F	L	T	L	Q	F	V	L	C	I	F	A
Template Known Secondary structure																								S		T	T	T		T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	D	G	N	G	V	P	R	G	P	L	A	P	L	L	I	G	L	L	I	A	V	I	G	A	S	M	G	P	L	T	G	F	A	M	N	P	A	R	D	F	G	P	K	V	F	A	W	L	A	G	W	G	N	V	A	F	T	G	G	R	D	I	P	Y	F	L	V	P	L	F	G	P	I	V	G	A	I
Query Conservation
Alig confidence														.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	D	E	R	R	N	G	R	L	G	S	.	V	A	L	A	V	G	F	S	L	T	L	G	H	L	F	G	M	Y	Y	T	G	A	G	M	N	P	A	R	S	F	A	P	A	I	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	F	T	N	H	W	V	Y	W	V	G	P	V	I	G	A	G
Template Known Secondary structure					T	T	S		S					.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	T			T	T	T	T
Template Predicted Secondary structure														.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.														.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	F	A	Y	R	K	L	I	G	R	H	L	P	C	D	I	C	V	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	S	L	L	Y	D	F	L	L	F	P	R	L	K	S	V	S	E	R	L	S
Template Known Secondary structure									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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