Job Description P39196 Confidence 4.74% Date Thu Jan 5 11:58:27 GMT 2012 Rank 16 Aligned Residues 205 % Identity 9% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.															40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	S	V	H	T	N	T	S	L	W	S	K	G	M	K	A	V	I	V	A	Q	F	L	S	A	F	G	D	N	A	L	L	F	A	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	A	Q	F	Y	P	E	W	S	Q	P	I	L	Q	M	V	F	V	G	A	Y	I	L	F	A
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T
Template Known Secondary structure		B				T	T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		67	.	.	70											.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Query Sequence		P	F	V	G	.	.	.	.	.	.	.	.	.	.	Q	V	A	D	S	F	A	K	G	R	V	M	M	F	A	N	G	L	K	L	L	G	A	A	S	I	C	F	G	I	N	P	F	L	G	Y	T	L	V	G	V	G	A	A	A	Y	S	P	A	K	Y	G	.	.	.	.	.	.	I	L	G	E	L	T	T	G
Query Conservation						.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D
Template Known Secondary structure							T											S	T	T	T																	T		G	G	G	T														T	T													T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	L	V	K	A	N	G	L	M	E	A	S	T	I	A	A	I	L	L	G	S	V	A	G	G	V	L	A	D	W	H	V	L	V	A	L	A	A	C	A	L	A	Y	G	G	A	V	V	A	N	I	Y	I	P	K	L	A	A	A	R	P	G	Q	S	W	N	L	I	N	M	T	R	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D	Y	L	R	P
Template Known Secondary structure			T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions