Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 7 Aligned Residues 405 % Identity 49% Template d2hhva2 SCOP info DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I Resolution 1.55

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		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	N	V	F	E	N	I	E	M	P	L	V	P	V	L	S	R	I	E	R	N	G	V	K	I	D	P	K	V	L	H	N	H	S	E	E	L	T	L	R	L	A	E	L	E	K	K	A	H	E	I	A	G	E	E	F	N	L	S	S	T	K	Q	L	Q	T	I	L	F	E	K	Q	G	I	K	P	L	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	R	L	L	V	E	L	E	Q	P	L	S	S	I	L	A	E	M	E	F	A	G	V	K	V	D	T	K	R	L	E	Q	M	G	K	E	L	A	E	Q	L	G	T	V	E	Q	R	I	Y	E	L	A	G	Q	E	F	N	I	N	S	P	K	Q	L	G	V	I	L	F	E	K	L	Q	L	P	V	L	K	K
Template Known Secondary structure								T	T																																														T	S				T	T											T	T	S							B
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	G	A	P	S	T	S	E	E	V	L	E	E	L	A	L	D	Y	P	L	P	K	V	I	L	E	Y	R	G	L	A	K	L	K	S	T	Y	T	D	K	L	P	L	M	I	N	P	K	T	G	R	V	H	T	S	Y	H	Q	A	V	T	A	T	G	R	L	S	S	T	D	P	N	L	Q	N	I	P	V
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		T	K	T	G	.	Y	S	T	S	A	D	V	L	E	K	L	A	P	Y	H	E	I	V	E	N	I	L	H	Y	R	Q	L	G	K	L	Q	S	T	Y	I	E	G	L	L	K	V	V	R	P	D	T	K	K	V	H	T	I	F	N	Q	A	L	T	Q	T	G	R	L	S	S	T	E	P	N	L	Q	N	I	P	I
Template Known Secondary structure			S	S	S	.	B											G	G	G																			T	T	T							S		T	T	T									S	S			S	S	S						S	S		T	T
Template Predicted Secondary structure						.
Template SS confidence
		550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.		.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		R	N	E	E	G	R	R	I	R	Q	A	F	I	A	P	E	D	.	Y	V	I	V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G	L	L	T	A	F	A	E	G	K	D	I	H	R	A	T	A	A	E	V	F	G	L	P	L	E	T	V	T	S	E	Q	R	R	S	A	K	A	I
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		R	L	E	E	G	R	K	I	R	Q	A	F	V	P	S	E	S	D	W	L	I	F	A	A	D	Y	S	Q	I	E	L	R	V	L	A	H	I	A	E	D	D	N	L	M	E	A	F	R	R	D	L	D	I	H	T	K	T	A	M	D	I	F	Q	V	S	E	D	E	V	T	P	N	M	R	R	Q	A	K	A	V
Template Known Secondary structure		S	S					G	G	G	G	G				S	S	T	T									S	S											T										T	T													T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	G	L	I	Y	G	M	S	A	F	G	L	A	R	Q	L	N	I	P	R	K	E	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P	G	V	L	E	Y	M	E	R	T	R	A	Q	A	K	E	Q	G	Y	V	E	T	L	D	G	R	R	L	Y	L	P	D	I	K	S	S	N	G	A	R	R	A	A	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	G	I	V	Y	G	I	S	D	Y	G	L	A	Q	N	L	N	I	S	R	K	E	A	A	E	F	I	E	R	Y	F	E	S	F	P	G	V	K	R	Y	M	E	N	I	V	Q	E	A	K	Q	K	G	Y	V	T	T	L	L	H	R	R	R	Y	L	P	D	I	T	S	R	N	F	N	V	R	S	F	A	E
Template Known Secondary structure																			T																																			S					T	T							G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
		841	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	I	N	A	P	M	Q	G	T	A	A	D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	R	V	R	M	I	M	Q	V	H	D	E	L	V	F	E	V	H	K	D	D	V	D	A	V	A	K	Q	I	H	Q	L	M	E	N	C	T	R	L	D	V	P	L	L	V	E	V	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	A	M	N	T	P	I	Q	G	S	A	A	D	I	I	K	K	A	M	I	D	L	N	A	R	L	K	E	E	R	L	Q	A	H	L	L	L	Q	V	H	D	E	L	I	L	E	A	P	K	E	E	M	E	R	L	C	R	L	V	P	E	V	M	E	Q	A	V	T	L	R	V	P	L	K	V	D	Y	H	Y
Template Known Secondary structure																															T	T		S								S	S								G	G	G														T	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
		921	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	N	W	D	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	T	W	Y	D	A
Template Known Secondary structure			S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		869	870	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions