Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 9 Aligned Residues 387 % Identity 27% Template d1x9ma2 SCOP info DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I Resolution 2.10

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	N	I	E	M	P	L	V	P	V	L	S	R	I	E	R	N	G	V	K	I	D	P	K	V	L	H	N	H	S	E	E	L	T	L	R	L	A	E	L	E	K	K	A	H	E	I	A	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	D	I	E	H	R	A	A	W	L	L	A	K	Q	E	R	N	G	F	P	F	D	T	K	A	I	E	E	L	Y	V	E	L	A	A	R	R	S	E	L	L	R	K	L	T	E	T	F	G	S	W	Y	Q	P	K	G	G	T	E	M	F	C	H	P	R	T	G	K	P	L	P	K	Y	P	R	I	K	T	P
Template Known Secondary structure																							B																											S								S			B			B		T	T	T			B		T	T	S			B	B
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
																													577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.					.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	N	L	S	S	T	K	Q	L	Q	T	I	L	F	E	K	Q	G	I	K	P	L	K	K	T	P	G	G	A	P	S	T	S	E	E	V	L	E	E	L	A	L	D	Y	P	.	.	.	.	L	P	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.																								.	.	.	.
Template Conservation																																																			.
Template Sequence		K	V	G	G	I	F	K	C	E	L	D	T	R	E	Y	V	A	G	A	P	Y	T	P	V	E	H	V	V	F	N	P	S	S	R	D	H	I	Q	K	K	L	Q	E	A	G	W	V	P	T	.	K	Y	T	D	K	G	A	P	V	V	D	D	E	V	L	E	G	V	R	V	D	D	P	E	K	Q	A	A	I	D
Template Known Secondary structure		S	S			S	B				B				S			T	T			B										T	T												T	T					.		B		T	T	S		B			S										S
Template Predicted Secondary structure																																																			.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.				.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680		.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																							.																	.	.	.	.	.
Query SS confidence																			.	.	.																																							.																	.	.	.	.	.
Query Sequence		V	I	L	E	Y	R	G	L	A	K	L	K	S	T	Y	T	D	.	.	.	K	L	P	L	M	I	N	P	K	T	G	R	V	H	T	S	Y	H	Q	A	V	T	A	T	G	R	L	S	S	T	D	P	N	L	Q	N	I	P	.	V	R	N	E	E	G	R	R	I	R	Q	A	F	I	A	P	.	.	.	.	.
Query Conservation																			.	.	.																																							.																	.	.	.	.	.
Alig confidence																			.	.	.									.																														.																	.	.	.	.	.
Template Conservation																														.
Template Sequence		L	I	K	E	Y	L	M	I	Q	K	R	I	G	Q	S	A	E	G	D	K	A	W	L	R	Y	V	A	E	.	D	G	K	I	H	G	S	V	N	P	N	G	A	V	T	G	R	A	T	H	A	F	P	N	L	A	Q	I	P	G	V	R	S	P	Y	G	E	Q	C	R	A	A	F	G	A	E	H	H	L	D	G
Template Known Secondary structure																	T	T	S	T	T								T	.	T	S								T	T		S	T	T	S						S	S		T	T					T	T	S	T	T							T	B	S	G	G	G	S	B		T
Template Predicted Secondary structure																														.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
					697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	D	Y	V	I	V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G	L	L	T	A	F	A	E	G	K	D	I	H	R	A	T	A	A	E	V	F	G	L	P	L	E	T	V	T	S	E	Q	R	R	S	A	K	A	I	N	F	G	L	I	Y	G	M	S	A	F	G	L
Query Conservation		.	.	.
Alig confidence		.	.	.																					.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		I	T	G	K	P	W	V	Q	A	G	I	D	A	S	G	L	E	L	R	C	L	A	H	.	.	.	.	.	.	F	M	A	R	F	D	N	G	E	Y	A	H	E	I	L	N	G	D	I	H	T	K	N	Q	I	A	A	E	L	P	T	R	D	N	A	K	T	F	I	Y	G	F	L	Y	G	A	G	D	E	K	I
Template Known Secondary structure		T	T			B									T	T									.	.	.	.	.	.							T	T									S										S			S	S													T	T
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Q	L	N	I	P	R	K	E	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P	G	V	L	E	Y	M	E	R	T	R	A	Q	A	K	E	Q	G	Y	V	E	T	L	D	G	R	R	L	Y	L	P	D	I	K	S	S	N	G	A	R	R	A	A	A	E	R	A	A	I	N	A	P	M	Q	G	T	A	A
Query Conservation
Alig confidence																																											.	.	.	.	.	.																		.	.
Template Conservation																																											.	.	.	.	.	.																		.	.
Template Sequence		G	Q	I	V	G	A	G	K	E	R	G	K	E	L	K	K	K	F	L	E	N	T	P	A	I	A	A	L	R	E	S	I	Q	Q	T	L	V	E	V	K	W	.	.	.	.	.	.	K	R	R	W	I	K	G	L	D	G	R	K	V	H	V	R	S	.	.	P	H	A	A	L	N	T	L	L	Q	S	A	G	A
Template Known Secondary structure			T	T	T	T																T														T	T	B				B	.	.	.	.	.	.	S		S					T	T	S						S		.	.	G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.																		.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.							.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.			.	.	.	.	600	.	.	.	.	.	.	.	.	.
		854	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.							.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.		.	.	.	.	.	.	900	.	.	.	.	.	.	.				.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.																						.															.	.	.
Query SS confidence																					.	.	.	.	.	.																						.															.	.	.
Query Sequence		D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	.	.	.	.	.	.	R	V	R	M	I	M	Q	V	H	D	E	L	V	F	E	V	H	K	D	D	V	.	D	A	V	A	K	Q	I	H	Q	L	M	E	N	C	.	.	.	T	R	L	D	V	P	L	L	V	E	V	G	S	G	E	N
Query Conservation																					.	.	.	.	.	.																						.															.	.	.
Alig confidence																					.	.	.	.	.	.																						.															.	.	.
Template Conservation
Template Sequence		L	I	C	K	L	W	I	I	K	T	E	E	M	L	V	E	K	G	L	K	H	G	W	D	G	D	F	A	Y	M	A	W	V	H	D	E	I	Q	V	G	C	R	T	E	E	I	A	Q	V	V	I	E	T	A	Q	E	A	M	R	W	V	G	D	H	W	N	F	R	C	L	L	D	T	E	G	K	M	G	P	N
Template Known Secondary structure																		T	T			B	S	T	T	S	S								T	T							S	S																						T	T		S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
		924	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	Q	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	A	I	C	H
Template Known Secondary structure		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		700	.	.	.	.