Job Description P00582 Confidence 92.21% Date Thu Jan 5 10:56:46 GMT 2012 Rank 109 Aligned Residues 192 % Identity 22% Template d1mswd_ SCOP info DNA/RNA polymerases DNA/RNA polymerases T7 RNA polymerase Resolution 2.10

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		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.						.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G	L	L	T	A	F	A	.	.	.	.	.	E	G	K	D	I	H	R	A	T	A	A	E	V	F	G	L	P	L	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	F	D	G	S	C	S	G	I	Q	H	F	S	A	M	L	R	D	E	V	G	G	R	A	V	N	L	L	P	S	E	T	V	Q	D	I	Y	G	I	V	A	K	K	V	N	E	I	L	Q	A	D	A	I	N	G	T	D	N	E	V	V	T	V	T	D	E	N	T	G	E	I	S	E	K	V	K	L	G	T
Template Known Secondary structure							S												T		T	T					T	T		S			S	S																					T	T	S								S	S	S	S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
													749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.																						.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	T	S	E	Q	R	R	S	A	K	A	I	N	F	G	L	I	Y	G	M	S	A	F	G	L	A	R	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	P	R	K	E	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.			.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		K	A	L	A	G	Q	W	L	A	Y	G	V	T	.	.	.	R	S	V	T	K	R	S	V	M	T	L	A	Y	G	S	K	E	F	G	F	R	Q	Q	V	L	E	D	T	I	Q	P	A	I	D	S	G	K	G	L	M	F	T	Q	P	N	Q	A	A	G	Y	M	A	K	L	I	W	E	S	V	S	V	T	V	V
Template Known Secondary structure										T	T				.	.	.										G	G	G	G	T														T							T	S				S		S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.				.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
		797				.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.																.	.	.	.	.	820	.	.	.	.	.	.																									.	.	.	830	.	.	.	.
Predicted Secondary structure			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	V	L	E	Y	M	E	R	T	R	A	Q	A	K	E	Q	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	T	L	D	G	R	R	L	Y	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	K	S	S	N	G	A
Query Conservation			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	V	E	A	M	N	W	L	K	S	A	A	K	L	L	A	A	E	V	K	D	K	K	T	G	E	I	L	R	K	R	C	A	V	H	W	V	T	P	D	G	F	P	V	W	Q	E	Y	K	K	P	I	Q	T	R	L	N	L	M	F	L	G	Q	F	R	L	Q	P	T	I	N	T	N	K	D	S	E	I	D
Template Known Secondary structure																			S					T	T	T															T	T	S								B			S	S						S	S	S								S		S	S			S			B
Template Predicted Secondary structure
Template SS confidence
		691	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
		835	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	A	A	A	E	R	A	A	I	N	A	P	M	Q	G	T	A	A	D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	R	V	R	M	I	M	Q	V	H	D	E	L	V	F	E	V	H	K	D	D	V	D	A	V	A	K	Q	I	H	Q	L	M
Query Conservation
Alig confidence																																		.	.	.	.	.	.														.	.
Template Conservation																																		.	.	.	.	.	.														.	.
Template Sequence		A	H	K	Q	E	S	G	I	A	P	N	F	V	H	S	Q	D	G	S	H	L	R	K	T	V	V	W	A	H	E	K	Y	.	.	.	.	.	.	G	I	E	S	F	A	L	I	H	D	S	F	G	.	.	T	I	P	A	D	A	A	N	L	F	K	A	V	R	E	T	M
Template Known Secondary structure																																	T	.	.	.	.	.	.									S	S				.	.			G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.														.	.
Template SS confidence
		771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.							.	.	.	.	.	.	.	810	.	.	.	.	.			.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions