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Job DescriptionP00582
Confidence100.00%DateThu Jan 5 10:56:46 GMT 2012
Rank4Aligned Residues536
% Identity43%Templatec4ktqA_
PDB info PDB header:transferase/dnaChain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   356...360.........370.........380.........390.........400.........410.........420........ .430....
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Query Sequence  TETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGIL. ANYGIE
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Template Sequence  LEEAPWPPPEGAFVGFVLSRKE. PMWADLLALA. . . . . . AARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLG
Template Known Secondary structure 
S


SS


SSS
.TTT

......TT
SSTTS
SSB
STTTT

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   294.....300.........310..... ....320..... ....330.........340.........350.........360......
 
   435....440.........450.........460.........470.........480.........490.........500.........510....
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Query Sequence  LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWP
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Template Sequence  LPP. GDDPMLLAYLLDPS. . NTTPEGVARRYGGEWTE. . . . . . . . . . . . . . . . . . . . . . . . . EAGERAALSERLFANLWG
Template Known Secondary structure 

B.



TT..


S



S.........................
TTTT
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   367.. 370.........380... ......390.........400 .........410........
 
   515....520.........530.........540.........550.........560.........570.........580.........590....
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Query Sequence  DLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQ
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Template Sequence  RLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDEL
Template Known Secondary structure  TTT
T
B
TTS


SS
TTTS
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   419420.........430.........440.........450.........460.........470.........480.........490........
 
   595....600.. .......610.........620.........630.........640.........650.........660.........670...
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Query Sequence  GIKPLKKT. PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD
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Template Sequence  GLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSD
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B
SSS

B


TTTTT
TTTTB
TTTS

SS

SSS

S
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   499500.........510.........520.........530.........540.........550.........560.........570........
 
   674.....680.........690.........700.........710.........720.........730.........740.........750...
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Query Sequence  PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ
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Template Sequence  PNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM
Template Known Secondary structure  S

SS


SSTBB

TTTT

TT

TT

STT
S
TT
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   579580.........590.........600.........610.........620.........630.........640.........650........
 
   754.....760.........770.........780.........790.........800.........810.........820.........830...
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Query Sequence  RRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNG
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Template Sequence  RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVK
Template Known Secondary structure  TT


TT

TT
S
TT


GGGG
S
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   659660.........670.........680.........690.........700.........710.........720.........730........
 
   834.....840.........850.........860.........870.........880.........890.........900.........910...
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Query Sequence  ARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVP
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Template Sequence  SVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE. . MGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVP
Template Known Secondary structure  T..TT

SSTTTTSS

SS
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   739740.........750.........760.........770.... .....780.........790.........800.........810......
 
   914.....920........
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Query Sequence  LLVEVGSGENWDQAH
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Template Sequence  LEVEVGIGEDWLSAK
Template Known Secondary structure 

SBTTTTT
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   817..820.........830.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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