Job Description P00582 Confidence 93.11% Date Thu Jan 5 10:56:46 GMT 2012 Rank 108 Aligned Residues 185 % Identity 22% Template c3spaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase, mitochondrial; PDBTitle: crystal structure of human mitochondrial rna polymerase Resolution 2.50 Å

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		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.						.	730	.	.	.	.	.	.	.	.	.	740	.																				.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	V	I	V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G	L	L	T	A	F	A	.	.	.	.	.	E	G	K	D	I	H	R	A	T	A	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	L	P	L	E	T	V	T	S	E	Q	R
Query Conservation																																.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.
Template Sequence		H	L	P	V	H	Q	D	G	S	C	N	G	L	Q	H	Y	A	A	L	G	R	D	S	V	G	A	A	S	V	N	L	E	P	S	D	V	P	Q	D	V	Y	S	G	V	A	A	Q	V	E	V	F	R	R	Q	D	A	Q	R	G	M	R	V	A	Q	V	L	E	G	F	I	T	.	.	.	.	.	.	.	.	R
Template Known Secondary structure										S	S										T	T								T	T		S			S	S																						T	T							T	T	T				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Template SS confidence
		916	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.									.
		755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.																	.	.	.	.	.	.	790	.	.	.	.	.	.	.				.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																	.	.
Query Sequence		R	S	A	K	A	I	N	F	G	L	I	Y	G	M	S	A	F	G	L	A	R	Q	L	N	I	P	R	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P	G	.	.	.	V	L	E	Y	M	E	R	T	R	A	Q	A	K	E	Q	G	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																	.	.
Template Conservation
Template Sequence		K	V	V	K	Q	T	V	M	T	V	V	Y	G	V	T	R	Y	G	G	R	L	Q	I	E	K	R	L	R	E	L	S	D	F	P	Q	E	F	V	W	E	A	S	H	Y	L	V	R	Q	V	F	K	S	L	Q	E	M	F	S	G	T	R	A	I	Q	H	W	L	T	E	S	A	R	L	I	S	H	M	G	S	V
Template Known Secondary structure																S	S	S												T		T	T	S		T	T	T																																								T	T
Template Predicted Secondary structure
Template SS confidence
		988	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.
			814	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.			.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890
Predicted Secondary structure		.																																.	.
Query SS confidence		.																																.	.
Query Sequence		.	Y	V	E	T	L	D	G	R	R	L	Y	L	P	D	I	K	S	S	N	G	A	R	R	A	A	A	E	R	A	A	I	.	.	N	A	P	M	Q	G	T	A	A	D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	R	V	R	M	I	M	Q	V	H	D	E	L	V	F	E	V	H	K
Query Conservation		.																																.	.
Alig confidence		.																								.	.	.						.	.																	.	.	.	.	.									.	.	.														.
Template Conservation																										.	.	.																								.	.	.	.	.									.	.	.														.
Template Sequence		V	E	W	V	T	P	L	G	V	P	V	I	Q	P	Y	R	L	D	K	P	N	T	R	K	.	.	.	Q	K	N	G	F	P	P	N	F	I	H	S	L	D	S	S	H	M	M	L	T	A	L	.	.	.	.	.	H	C	Y	R	K	G	L	T	.	.	.	F	V	S	V	H	D	C	Y	W	T	H	A	A	.
Template Known Secondary structure							T	T	S								B				B					.	.	.																								.	.	.	.	.					T	T			.	.	.					T	T						G	G	.
Template Predicted Secondary structure																										.	.	.																								.	.	.	.	.									.	.	.														.
Template SS confidence
		1068	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.				.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.						.	.	.	.	.	1120	.	.				.	.	.	.	.	.	.	1130	.	.	.	.	.
		891	.	.	.	.	.	.	.	.	900	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	D	A	V	A	K	Q	I	H	Q	L	M
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	V	S	V	M	N	Q	V	C	R	E	Q	F
Template Known Secondary structure		.	G
Template Predicted Secondary structure		.
Template SS confidence
			1159	1160	.	.	.	.	.	.	.	.	.	1170	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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