Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 15 Aligned Residues 267 % Identity 22% Template c3q8lA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ Resolution 2.32 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		Q	N	P	L	I	L	V	D	G	S	S	Y	L	Y	R	A	Y	H	A	F	P	P	.	.	.	.	L	T	N	S	A	G	E	P	T	G	A	M	Y	G	V	L	N	M	L	R	S	L	I	M	Q	Y	K	P	T	H	A	A	V	V	F	D	A	K	G	K	T	F	R	D	E	L	F	E	H	Y	K	S	H	R
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.																									.	.
Template Conservation																																																				.	.
Template Sequence		F	G	R	K	V	A	I	D	A	S	M	S	I	Y	Q	F	L	I	A	V	R	Q	G	G	D	V	L	Q	N	E	E	G	E	T	T	S	H	L	M	G	M	F	Y	R	T	I	R	M	M	E	.	.	N	G	I	K	P	V	Y	V	F	D	G	K	P	P	Q	L	K	S	G	E	L	A	K	R	S	E	R	R
Template Known Secondary structure		T	T																					T	T				B		T	T	S		B																	.	.	T	T										S			G	G	G
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		82	.	.	.	.	.	.	.	90																								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	M	P	D	D	L	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	E	P	L	H	A	M	V	K	A	M	G	L	P	L	L	A	V	S	G	V	E	A	D	D	V	I	G	T	L	A	R	E	A	E	K	A	G	R	P	V	L	I	S	T	G	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.
Template Conservation																																																						.													.	.	.	.
Template Sequence		A	E	A	E	K	Q	L	Q	Q	A	Q	A	A	G	A	E	Q	E	V	E	K	F	T	K	R	L	V	K	V	T	K	Q	H	N	D	E	C	K	H	L	L	S	L	M	G	I	P	Y	L	D	A	P	.	S	E	A	E	A	S	C	A	A	L	V	K	.	.	.	.	A	G	K	V	Y	A	A	A	T	E	D
Template Known Secondary structure														T	T																															T							S	.	S												.	.	.	.	T	T	S	S	S					S
Template Predicted Secondary structure																																																						.													.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		K	D	M	A	Q	L	V	T	P	N	I	T	L	I	N	T	M	T	N	.	.	.	.	.	.	T	I	L	G	P	E	E	V	V	N	K	Y	G	V	P	P	E	L	I	I	D	F	L	A	L	M	G	D	S	S	D	N	I	P	G	V	P	G	V	G	E	K	T	A	Q	A	L	L	Q	G	L	G	G	L	D
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																												.	.
Template Conservation																																																						.	.
Template Sequence		M	D	C	L	T	F	G	S	P	V	L	M	R	H	L	T	A	S	E	A	K	K	L	P	I	Q	E	F	H	L	S	R	I	L	Q	E	L	G	L	N	Q	E	Q	F	V	D	L	C	I	L	L	G	.	.	S	D	Y	C	E	S	I	R	G	I	G	P	K	R	A	V	D	L	I	Q	K	H	K	S	I	E
Template Known Secondary structure		T					T	T		S					S					T	T			S															T															.	.	B	T	T	B				T	T															S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.
Query Sequence		T	L	Y	A	E	P	E	K	I	A	G	L	S	F	R	G	A	K	T	M	A	A	K	L	E	Q	N	K	E	V	A	Y	L	S	Y	Q	L	A	T	I	K	T	D	V	E	L	E	L	T	C	E	Q	L	E	V	Q	Q	P	A	A	E	E	L	L	G	L	.	.	.	.	.	.	F	K	K	Y	E	F	K	R
Query Conservation																																																																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.														.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		E	I	V	R	R	L	D	P	N	K	Y	P	V	P	E	N	W	L	.	.	.	.	.	.	H	K	E	A	H	Q	L	F	L	E	P	E	V	.	.	.	.	.	.	.	.	L	D	P	E	S	V	E	L	K	W	S	E	P	N	E	E	E	L	I	K	F	M	C	G	E	K	Q	F	S	E	E	R	I	R	S
Template Known Secondary structure							S		T	T	T	S				T	T			.	.	.	.	.	.										S				.	.	.	.	.	.	.	.			T	T	T	S																	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.									.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		287	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	A	D	V	E	A	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	K	R	L	S	K	S	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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