Job Description P00582 Confidence 70.36% Date Thu Jan 5 10:56:46 GMT 2012 Rank 141 Aligned Residues 194 % Identity 19% Template c3fqdA_ PDB info PDB header:hydrolase/protein binding Chain: A: PDB Molecule:5'-3' exoribonuclease 2; PDBTitle: crystal structure of the s. pombe rat1-rai1 complex Resolution 2.20 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																		.																																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	V	D	G	S	S	Y	L	Y	R	A	Y	H	A	F	.	P	P	L	T	N	S	A	G	E	P	T	G	A	M	Y	G	V	L	N	M	L	R	S	L	I	M	Q	Y	K	P	T	H	A	.	A	V	V	F	D	A	K	G	K	T	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																										.	.	.						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.
Template Sequence		L	Y	L	D	X	N	G	I	V	H	P	C	S	H	P	E	D	R	P	A	P	E	T	E	D	E	X	X	V	A	V	F	E	Y	T	D	R	I	L	A	X	V	.	.	.	R	P	R	Q	L	L	F	I	A	I	D	G	V	A	P	R	A	K	X	N	Q	Q	R	S	R	R	F	R	S	S	R	E	A	A	L
Template Known Secondary structure						T									S		S	S	S					S																				.	.	.
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
							71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.															.	.	.	.	.	.	.	.	100	.	.													.	.	.	.	.	.	.	110	.	.				.	.	.	.
Predicted Secondary structure		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		.	.	.	.	.	D	E	L	F	E	H	Y	K	S	H	R	P	P	M	P	D	D	L	R	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	P	L	H	A	M	V	K	A	M	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	L	L	A	V	S	G	V	.	.	.	E	A	D	D
Query Conservation		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		K	E	E	E	L	Q	A	F	I	E	E	A	K	Q	Q	G	I	P	I	D	E	N	A	T	K	K	K	S	W	D	S	N	C	I	T	P	G	T	P	F	X	D	T	L	A	K	S	L	R	Y	Y	I	I	N	K	L	N	S	D	P	C	W	R	N	V	R	F	I	L	S	D	A	S	V	P	G	E	G	E	H
Template Known Secondary structure																	T			B						S						G	G	G	S	S	T	T	S																			T	S		G	G	G	T	T								T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.																.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence												.	.	.	.	.																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		V	I	G	T	L	A	R	E	A	E	.	.	.	.	.	K	A	G	R	P	V	L	I	S	T	G	D	K	D	M	A	Q	L	V	.	.	.	.	T	P	N	I	T	L	I	N	T	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	T	I	L	G	P	E	E	V	V	N	K	.	.	.	.
Query Conservation												.	.	.	.	.																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence												.	.	.	.	.																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		K	I	X	E	F	I	R	S	Q	R	V	K	P	E	Y	D	P	N	T	H	H	V	V	Y	G	L	D	A	D	L	I	X	L	G	L	A	T	H	E	P	H	F	R	V	L	R	E	D	V	F	K	E	E	R	L	G	I	K	R	L	D	D	K	P	F	I	W	L	N	V	S	I	L	R	E	Y	L	E	V	E
Template Known Secondary structure												T	S	T	T	S		T	T										T	T								T	T		S	S											T	T	T	T	T			B	T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
									169	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.											.	.	.	.																		.	.
Query SS confidence		.	.	.	.	.	.	.											.	.	.	.																		.	.
Query Sequence		.	.	.	.	.	.	.	Y	G	V	P	P	E	L	I	I	D	.	.	.	.	F	L	A	L	M	G	D	S	S	D	N	I	P	G	V	P	G	.	.	V	G	E	K	T	A	Q	A	L	L	Q	G	L
Query Conservation		.	.	.	.	.	.	.											.	.	.	.																		.	.
Alig confidence		.	.	.	.	.	.	.											.	.	.	.							.	.										.	.
Template Conservation																													.	.
Template Sequence		L	Y	V	P	N	L	P	F	P	F	D	L	E	R	A	I	D	D	W	V	F	F	I	F	F	V	G	.	.	N	D	F	L	P	H	L	P	S	L	D	I	R	D	G	A	V	E	R	L	T	E	I	W
Template Known Secondary structure					T	T		S	S															G	G	G	G		.	.		S	S	S				T	T			G	G	G	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions