Job Description P00582 Confidence 65.17% Date Thu Jan 5 10:56:46 GMT 2012 Rank 152 Aligned Residues 191 % Identity 17% Template c2y35A_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex Resolution 3.20 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																				.											.	.	.	.	.
Query SS confidence																																																				.											.	.	.	.	.
Query Sequence		I	L	V	D	G	S	S	Y	L	Y	R	A	Y	H	A	F	P	P	L	T	N	S	A	G	E	P	T	G	A	M	Y	G	V	L	N	M	L	R	S	L	I	M	Q	Y	K	P	T	H	A	A	.	V	V	F	D	A	K	G	K	T	F	.	.	.	.	.	R	D	E	L	F	E	H	Y	K	S	H	R	P	P
Query Conservation																																																				.											.	.	.	.	.
Alig confidence																			.	.	.																						.	.	.							.											.	.	.	.	.
Template Conservation																			.	.	.																						.	.	.
Template Sequence		L	Y	L	D	M	N	G	I	V	H	N	C	S	H	P	F	H	.	.	.	L	E	E	E	Q	I	F	Q	E	I	F	N	Y	V	D	K	L	F	Y	L	I	.	.	.	K	P	Q	R	L	F	F	L	S	V	D	G	V	A	P	R	A	K	M	N	Q	Q	R	S	R	R	F	R	T	A	R	E	A	E	Q	Q
Template Known Secondary structure																			.	.	.																						.	.	.			S	S									S
Template Predicted Secondary structure																			.	.	.																						.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		84	.	.	.	.	.	90	.	.																	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.											.	.	.																	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.											.	.	.																	.	.	.	.	.
Query Sequence		M	P	D	D	L	R	A	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	L	H	A	M	V	K	A	M	.	.	.	.	.	.	.	.	G	L	P	L	L	A	V	S	G	V	.	.	.	E	A	D	D	V	I	G	T	L	A	R	E	A	E	K	A	.	.	.	.	.	G	R	P
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.											.	.	.																	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.											.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		E	A	K	A	A	Q	R	R	F	D	S	N	C	I	T	P	G	T	E	F	M	V	R	L	Q	E	G	L	R	A	F	L	K	T	K	I	S	T	D	P	L	W	Q	R	C	T	V	I	L	S	G	Q	E	A	P	G	E	G	E	H	K	I	M	D	Y	I	R	Y	M	K	T	Q	P	D	Y	D	P	N	T	R
Template Known Secondary structure												S	G	G	G	S	T	T	S																						G	G	G	S	S	S							S	S	S		S																S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.																.	.	160	.	.	.	.	.	.	.	.													.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		V	L	I	S	T	G	D	K	D	M	A	Q	L	V	.	.	.	.	T	P	N	I	T	L	I	N	T	M	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	L	G	P	E	E	V	V	N	K	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	V	P	P	E	L	I	I	D	.	.
Query Conservation																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation
Template Sequence		H	C	L	Y	G	L	D	A	A	L	I	I	L	G	L	C	T	H	E	L	H	F	V	V	L	R	E	E	V	K	F	G	R	N	V	K	R	T	S	V	E	E	T	R	F	F	L	L	H	L	G	L	L	R	E	Y	L	E	L	E	F	D	A	L	R	T	D	E	H	K	L	D	I	A	Q	L	I	D	D	W
Template Known Secondary structure								S										T	T		S	S							S	S		T	T			T	T				G	G	G																			G	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
				179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																		.	.
Query SS confidence		.	.																		.	.
Query Sequence		.	.	F	L	A	L	M	G	D	S	S	D	N	I	P	G	V	P	G	.	.	V	G	E	K	T	A	Q	A	L	L	Q	G	L
Query Conservation		.	.																		.	.
Alig confidence		.	.							.	.										.	.
Template Conservation										.	.
Template Sequence		V	L	M	G	F	L	V	G	.	.	N	D	F	I	P	H	L	P	C	L	H	I	S	S	N	A	L	P	L	L	Y	R	T	Y
Template Known Secondary structure										.	.		T	T	S				T	T			T	T	T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		279	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions