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Job DescriptionP00582
Confidence98.20%DateThu Jan 5 10:56:46 GMT 2012
Rank68Aligned Residues162
% Identity22%Templatec2vwkA_
PDB info PDB header:dna replicationChain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
Resolution2.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PVFAFDTETD. . . SLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLE. . DEKALKVGQN. LKY
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Template Sequence  KMLAFDIETLYHEGEKFAEGPILMISYADEEGARVITWRNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVL. ITYNGDNF
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   136...140.........150.........160.........170.........180.........190.........200...... ...210....
 
   424.....430 ..... ....440.........450.........460....... ..470....
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Query Sequence  DRGILAN. . . . YGIEL. . . . . . . . . . . . . . . . . . . . . . . RGIAFDTMLESYILNSVAGRHDMDSLAERWLK. . HKTITFE
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Template Sequence  AFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRR. TINLPTYTLEAVYEAIFGQPKEKVYAE
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   215....220.........230.........240.........250.........260...... ...270.........280.........290...
 
   475....480.........490.........500.........510........
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Query Sequence  EIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK
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Template Sequence  EIAQAWETGE. . . . . GLERVARYSMEDAKVTYELGKEFFPMEAQ
Template Known Secondary structure  T
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   294.....300... ......310.........320.........330..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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