Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 10 Aligned Residues 275 % Identity 15% Template c2ihnA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate Resolution 3.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																	.	.																														.
Query SS confidence																																	.	.																														.
Query Sequence		Q	N	P	L	I	L	V	D	G	S	S	Y	L	Y	R	A	Y	H	A	F	P	P	L	T	N	S	A	G	E	P	T	.	.	G	A	M	Y	G	V	L	N	M	L	R	S	L	I	M	Q	Y	K	P	T	H	A	A	V	V	F	D	A	K	.	G	K	T	F	R	D	E	L	F	E	H	Y	K	S	H	R	P
Query Conservation																																	.	.																														.
Alig confidence																																	.	.																														.
Template Conservation
Template Sequence		K	E	G	I	C	L	I	D	F	S	Q	I	A	L	S	T	A	L	V	N	F	P	D	K	E	K	I	N	L	S	M	V	R	H	L	I	L	N	S	I	K	F	N	V	K	K	A	K	T	L	G	Y	T	K	I	V	L	C	I	D	N	A	K	S	G	Y	W	R	R	D	F	A	Y	Y	Y	K	K	N	R	S
Template Known Secondary structure		S												T								S		S	S	S																								T	T	T												T	T									T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		83	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																																						.
Query SS confidence												.	.																																																						.
Query Sequence		P	M	P	D	D	L	R	A	Q	I	.	.	E	P	L	H	A	M	V	K	A	M	G	L	P	L	L	A	V	S	G	V	E	A	D	D	V	I	G	T	L	A	R	E	A	E	K	A	G	R	P	V	L	I	S	T	G	D	K	D	M	A	Q	L	V	.	T	P	N	I	T	L	I	N	T	M	T	N	T	I
Query Conservation												.	.																																																						.
Alig confidence												.	.																																																						.										.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		T	W	D	W	E	G	Y	F	E	S	S	H	K	V	I	D	E	L	K	A	Y	M	P	Y	I	V	M	D	I	D	K	Y	E	A	N	D	H	I	A	V	L	V	K	K	F	S	L	E	G	H	K	I	L	I	I	S	S	D	G	D	F	T	Q	L	H	K	Y	P	N	V	K	Q	W	S	P	.	.	.	.	.
Template Known Secondary structure			S																				S	S	S						T	T																		T										G	G	G	G	G	G	G	G	S	S	S						T	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		L	G	P	E	E	V	V	N	K	Y	G	V	P	P	E	L	I	I	D	F	L	A	L	M	G	D	S	S	D	N	I	P	G	V	P	G	V	G	E	K	T	A	Q	A	L	L	Q	G	.	.	.	.	.	.	L	G	G	L	D	T	L	Y	A	E	P	E	K	I	A	G	L	S	F	R	G	A	K	T	M	A
Query Conservation																																																		.	.	.	.	.	.
Alig confidence														.																																				.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation														.																																																										.	.	.	.	.	.	.
Template Sequence		M	H	K	K	W	V	K	I	K	S	G	S	.	A	E	I	D	C	M	T	K	I	L	K	G	D	K	K	D	N	V	A	S	V	K	V	R	S	D	F	W	F	T	R	V	E	G	E	R	T	P	S	M	K	T	S	I	V	E	A	I	A	N	D	R	E	Q	A	K	V	.	.	.	.	.	.	.	L	L	T
Template Known Secondary structure		T	T		S	B					S	S		.													B	G	G	G	T	B			T	T	S		T	T							T	T																		G	G	G				.	.	.	.	.	.	.		S
Template Predicted Secondary structure														.																																																										.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	E	Q	N	K	E	V	A	Y	L	S	Y	Q	L	A	T	I	K	T	D	V	E	L	E	L	T	C	E	Q	L	E	V	Q	Q	P	A	A	E	E	L	L	G	L	F	K	K	Y	E	F	K	R	W	T	A	D	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	E	Y	N	R	Y	K	E	N	L	V	L	I	D	F	D	Y	I	P	D	N	I	A	S	N	I	V	N	Y	Y	N	S	Y	K	L	P	P	R	G	K	I	Y	S	Y	F	V	K	A	G	L	S	K	L	T	N	S	I	N	E
Template Known Secondary structure																	G	G	G	S														T						T	T	T	T								T		T	T	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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