Job Description P00582 Confidence 99.87% Date Thu Jan 5 10:56:46 GMT 2012 Rank 30 Aligned Residues 201 % Identity 16% Template c2hbkA_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn Resolution 2.25 Å

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		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	S	V	A	D	E	A	P	E	V	T	A	T	V	I	S	Y	D	N	Y	V	T	I	L	D	E	E	T	L	K	A	W	I	A	K	L	E	K	A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		S	P	E	I	L	Q	I	R	E	E	I	P	S	K	S	W	D	D	S	V	P	I	W	V	D	T	S	T	E	L	E	S	M	L	E	D	L	K	N	T	K	E	I	A	V	D	L	E	H	H	D	Y	R	S	Y	Y	G	I	V	C	L	M	Q	I	S	T	R	E	R	D	Y	L	V	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	S	S										G	G	G								S												T	T		S											S	S	S	S	S											S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	D	A	P	D	Q	I	S	R	E	R	A	L	E	L	L	K	P	L	L	E	D	E	K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L	A	N	.	Y	G	I	E	L	R	G	I	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H
Query Conservation																																											.
Alig confidence		.	.	.	.																																						.								.												.	.
Template Conservation		.	.	.	.																																														.												.	.
Template Sequence		.	.	.	.	D	T	L	K	L	R	E	N	L	H	I	L	N	E	V	F	T	N	P	S	I	V	K	V	F	H	G	A	F	M	D	I	I	W	L	Q	R	D	L	G	L	Y	V	V	G	.	L	F	D	T	Y	H	A	S	K	A	I	.	.	G	L	P	R	H	S	L	A	Y	L	L	E	N	F	A	N	F
Template Known Secondary structure		.	.	.	.		T	T	T	T	T	T	T	G	G	G	G					T		T	T	S					S	S																	S	S	.												.	.	T		S			S
Template Predicted Secondary structure		.	.	.	.																																														.												.	.
Template SS confidence
						266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D	L	Q	K	H	K	G	P	L	N	V	F	E	N	I	E
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		K	T	S	K	K	Y	Q	L	A	D	W	R	I	R	P	L	S	.	.	.	.	.	.	K	P	M	T	A	A	A	R	A	D	T	H	F	L	L	N	I	Y	D	Q	L	R	N	K	L	I	E	S	N	K	L	A	G	V	L	Y	E	S	R
Template Known Secondary structure						T	T	T	T	S		T	T		S	S			.	.	.	.	.	.													T															T	T
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.							.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions