Job Description P00582 Confidence 97.33% Date Thu Jan 5 10:56:46 GMT 2012 Rank 78 Aligned Residues 156 % Identity 21% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

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		351	.	.	.	.	.	.	.	.	360									.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.																	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.						.	.													.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.						.	.													.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	A	F	D	T	E	T	D	S	.	.	.	.	.	.	.	.	L	D	N	I	S	.	.	A	N	L	V	G	L	S	F	A	I	E	P	.	.	.	.	.	.	G	V	A	A	Y	I	P	V	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	L	D	A	P	D	Q	I	S	R
Query Conservation												.	.	.	.	.	.	.	.						.	.													.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.						.	.													.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F	D	S	E
Template Known Secondary structure													S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430						.	.	.	.	.	.																																.	.	.
Predicted Secondary structure														.	.											.											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.											.											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	A	L	E	L	L	K	P	L	L	E	.	.	D	E	K	A	L	K	V	G	Q	N	.	L	K	Y	D	R	G	I	L	A	N	.	.	.	.	.	Y	G	I	E	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	A
Query Conservation														.	.											.											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.						.					.											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	.	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K	V	N	G	M	V	N
Template Known Secondary structure																		S			.			S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S							B	T	T	B
Template Predicted Secondary structure																					.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470			.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T	.	.	I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M
Query Conservation																																	.	.
Alig confidence										.																							.	.													.	.	.	.
Template Conservation										.																																					.	.	.	.
Template Sequence		I	D	M	Y	G	I	I	T	.	D	K	I	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	.	.	.	.	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K	F
Template Known Secondary structure										.	T	T				S			S																		T	T	T								.	.	.	.
Template Predicted Secondary structure										.																																					.	.	.	.
Template SS confidence
		523	.	.	.	.	.	.	530		.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.					.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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