Job Description P00582 Confidence 94.13% Date Thu Jan 5 10:56:46 GMT 2012 Rank 104 Aligned Residues 140 % Identity 14% Template c2ex3I_ PDB info PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein Resolution 3.00 Å

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		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q	I	S	R	E	R	A	L	E	L	L	K	P	L	L	E	D	E	K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L
Query Conservation
Alig confidence														.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	M	Y	S	C	A	F	E	T	T	T	.	K	V	E	D	C	R	V	W	A	Y	G	Y	M	N	I	E	D	H	S	E	Y	K	I	G	N	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	M	A	W	V	L	K	V	Q	A	D	L	Y	F	H	N	L	K	F	A	G	A	F	I
Template Known Secondary structure														.		S	S	S											S	S		T	T						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.												S					S	S
Template Predicted Secondary structure														.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.															.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		429	430	.	.	.	.	.	.																																							.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	Y	G	I	E	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.						.	.	.	.
Template Conservation																																																						.	.	.	.						.	.	.	.
Template Sequence		I	N	W	L	E	R	N	G	F	K	W	S	A	D	G	L	P	N	T	Y	N	T	I	I	S	R	M	G	Q	W	Y	M	I	D	I	C	L	G	Y	K	G	K	R	K	I	H	T	V	I	Y	D	S	.	.	.	.	L	K	K	L	P	.	.	.	.	F	P	V	K	K	I	A	K	D	F	K	L	T	V	L
Template Known Secondary structure								T	T					S	S			T	T								T	T														T	T											.	.	.	.				S		.	.	.	.	S									T	T
Template Predicted Secondary structure																																																						.	.	.	.						.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		K	G	D	I	D	Y	H	.	.	.	.	K	E	R	P	V	G	Y	K	I	T	P	E	E	Y	A	Y	I	K	N	D	I	Q	I	I	A	E	A	L	L	I	Q	F	K	Q
Template Known Secondary structure		S	S				S	S	.	.	.	.	S				T	T																											T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions