Job Description P00582 Confidence 95.24% Date Thu Jan 5 10:56:46 GMT 2012 Rank 94 Aligned Residues 171 % Identity 31% Template c2a1sC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of native parn nuclease domain Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.																.	.	.	.	370	.	.	.	.	.						.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query Sequence		E	E	T	L	K	A	W	I	A	K	L	E	K	A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	L	V	G	L	S	F	A	I	.	.	.	.	.	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		K	S	N	L	H	K	V	Y	Q	A	I	E	E	A	D	F	F	A	I	D	G	E	F	S	G	I	S	D	F	D	T	P	E	E	R	Y	Q	K	L	K	K	H	S	M	D	F	L	L	F	Q	F	G	L	C	T	F	K	Y	D	Y	T	D	S	K	Y	I	T	K	S	F	N	F	Y	V	F	P	K	P	F	N
Template Known Secondary structure														T		S									S		S																	T	T	T	B														T	T	T	T											B						S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		396	.																																																											.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	R	A	L	E	L	L	K	P	L	L	E	D	E	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		R	S	S	P	D	V	K	F	V	C	Q	S	S	S	I	D	F	L	A	S	Q	G	F	D	F	N	K	V	F	R	N	G	I	P	Y	L	N	Q	E	E	E	R	Q	L	R	E	Q	Y	D	P	V	T	I	P	E	D	Q	K	K	F	I	D	Q	V	V	E	K	I	E	D	L	L	Q	S	E	E	N	K	N	L
Template Known Secondary structure		S	S	S						B											T	T	T								T	T		B		B											T									T	T	T																S		S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	E	P	C	T	G	F	Q	R	K	L	I	Y	Q	T	L	S	W	K	Y	P	K	G	I	H	V	E	T	L	E	T	E	K	K	E	R	Y	I	V	I	S	K	V	D	E	E	E	R	K	R	R	E	Q	Q	K	H	A	K	E	Q	E	E	L	N	D	A	V	G	F	S	R	V	I	H	A	I	A	N	S
Template Known Secondary structure								S															S	S	S									T	T																																			B	T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430			.	.	.	.	.	.	.	.															.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																				.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																				.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L	A	N	.	.	Y	G	I	E	L	R	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	T	M	L	E	S	Y	I	.	.	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T	I	T	F	E
Query Conservation																				.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence																				.	.			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																								.
Template Sequence		G	K	L	V	I	G	H	N	M	L	L	D	V	M	H	T	V	H	Q	F	Y	C	.	P	L	P	A	D	L	S	E	F	K	E	M	T	T	C	V	F	P	R	L	L	D	T	K	L	M	A	S	T	Q	P	F	K	D	I	I	N	N	T	S	L	A	E	L	E	K	R	L	K	E	T	P	F	N	P	P	K
Template Known Secondary structure								S	S													T		.				S	S									T	T	T		S	S										S	T	T	T	T	T	T					S								T	T	S	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.
Template Sequence		V	E	S	A	E	G	F	P	S	Y	Q	L	H	E	.	.	.	.	.	.	.	.	.	A	G	Y	D	A	Y	I	T	G	L	C	F	I	S	M	A	N	Y	L
Template Known Secondary structure						T	T	S								.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.										.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions