Job Description P00582 Confidence 97.15% Date Thu Jan 5 10:56:46 GMT 2012 Rank 81 Aligned Residues 143 % Identity 10% Template c1zbhA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease Resolution 3.00 Å

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		351	.	.	.	.	.	.	.	.					360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.																						.	.	.	.	400	.	.	.	.
Predicted Secondary structure											.	.	.	.																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	A	F	D	T	E	T	D	.	.	.	.	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	.	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	R	E	R	A	L	E	L
Query Conservation											.	.	.	.																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	C	I	I	D	F	E	A	T	C	E	E	G	N	P	P	E	F	V	H	E	I	I	E	F	P	V	V	L	L	N	T	H	T	L	E	I	E	D	T	F	Q	Q	Y	V	R	P	E	I	N	T	Q	L	S	D	F	C	I	S	L	T	G	I	T	Q	D	Q	V	D	R	A	D	T	F	P	Q	V	L	K	K
Template Known Secondary structure													T	T			T	T															T	T	T											B			S	S	S		S																		T	S	B
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.						.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430					.	.	.	.	.	.				.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure												.	.	.	.	.													.					.	.	.	.							.	.	.							.
Query SS confidence												.	.	.	.	.													.					.	.	.	.							.	.	.							.
Query Sequence		L	K	P	L	L	E	D	E	K	A	.	.	.	.	.	L	K	V	G	Q	N	L	K	Y	D	R	G	.	I	L	A	N	.	.	.	.	Y	G	I	E	L	R	.	.	.	G	I	A	F	D	T	.	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T
Query Conservation												.	.	.	.	.													.					.	.	.	.							.	.	.							.
Alig confidence												.	.	.	.	.													.					.	.	.	.							.	.	.							.
Template Conservation
Template Sequence		V	I	D	L	M	K	L	K	E	L	G	T	K	Y	K	Y	S	L	L	T	D	G	S	W	D	M	S	K	F	L	N	I	Q	C	Q	L	S	R	L	K	Y	P	P	F	A	K	K	W	I	N	I	R	K	S	Y	G	N	F	Y	K	V	P	R	S	Q	T	K	L	T	I	M	L	E	K	L	G	M	D	Y	D
Template Known Secondary structure									T	T	B	T	T	T	B							S	S	S					T									T	T	B				G	G	G	S														T			G	G	G		S								T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	P	N	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	D	D	S	K	N	I	A	R	I	A	V	R	M	L	Q	D
Template Known Secondary structure		S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.																							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions