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Job DescriptionP00582
Confidence98.06%DateThu Jan 5 10:56:46 GMT 2012
Rank69Aligned Residues158
% Identity19%Templatec1s5jA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   347..350.........360. ..... ...370.........380.........390..... ....400........
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Query Sequence  EKAPVFAFDTETDSL. . . . . . DNISA. . NLVGLSFAIEPGVAAYIPVAHDYLDAPDQ. . . . . . . . . . ISRERALELLKPL
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Template Sequence  PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDI
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   223......230.........240.........250.........260.........270.........280.........290.........300..
 
   409410.........420 .........430 .. .......440.........450.........460
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Query Sequence  LEDEKALKVGQN. LKYDRGILAN. . . . YG. . . . . . . . . . . . . . . . . . . . . . . IELRGIAFDTMLESYILNSVAGRHDMDS
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Template Sequence  LLEYPIV. LTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDA
Template Known Secondary structure  TT
S.SSTTTTTTT

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   303...... 310.........320.........330.........340.........350.........360.........370.........380.
 
   461........470.........480.........490.........500.........510......
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Query Sequence  LAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL
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Template Sequence  VAKALLGTSKVD. . . . . . . . . . . TLISFLDVEKLIEYNFRDAEITLQLTTFNNDLT
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   382.......390... ......400.........410.........420......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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