Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 3 Aligned Residues 578 % Identity 40% Template c1njzA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site Resolution 2.00 Å

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		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	N	Y	V	T	I	L	D	E	E	T	L	K	A	W	I	A	K	L	E	K	A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q	I	S	R	E	R	A	L	E	L	L
Query Conservation
Alig confidence												.	.	.	.	.	.								.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.								.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	M	A	F	T	L	A	D	R	.	.	.	.	.	.	V	T	E	E	M	L	A	.	D	K	A	A	L	V	V	E	V	V	E	E	N	Y	H	D	A	P	I	V	G	I	A	V	V	N	E	H	G	R	F	F	L	R	P	E	T	A	L	A	D	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	F
Template Known Secondary structure										S	S	.	.	.	.	.	.			G	G	G			.	S										S	S	S		T	T											T	T											T	T				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.								.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.													.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	L	L	E	D	E	K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L	A	N	Y	G	I	E	L	R	G	I	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T	I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	W	L	G	D	E	T	K	K	K	S	M	F	D	S	K	R	A	A	V	A	L	K	W	K	G	I	E	L	C	G	V	S	F	D	L	L	L	A	A	Y	L	L	D	P	A	Q	G	V	D	D	V	A	A	A	A	K	M	K	Q	Y	E	A	V	R	P	D	E	A	V	Y	G	K	G	A	K	R	A	V
Template Known Secondary structure								T	T	S					S	S											T	T																			G	G	G				S							T	T	T			S	S									S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D	L	Q	K	H	K	G	P	L	N	V	F	E	N	I	E	M	P	L	V	P	V	L	S	R	I	E	R	N	G	V	K	I	D	P	K	V	L	H	N	H	S	E	E	L	T	L	R	L	A	E
Query Conservation
Alig confidence					.	.	.																										.
Template Conservation					.	.	.																										.
Template Sequence		P	D	E	.	.	.	P	V	L	A	E	H	L	V	R	K	A	A	A	I	W	E	L	E	R	P	F	L	D	E	L	.	R	R	N	E	Q	D	R	L	L	V	E	L	E	Q	P	L	S	S	I	L	A	E	M	E	F	A	G	V	K	V	D	T	K	R	L	E	Q	M	G	K	E	L	A	E	Q	L	G	T
Template Known Secondary structure					.	.	.																										.			T	T								T
Template Predicted Secondary structure					.	.	.																										.
Template SS confidence
		438	.	440				.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	K	A	H	E	I	A	G	E	E	F	N	L	S	S	T	K	Q	L	Q	T	I	L	F	E	K	Q	G	I	K	P	L	K	K	T	P	G	G	A	P	S	T	S	E	E	V	L	E	E	L	A	L	D	Y	P	L	P	K	V	I	L	E	Y	R	G	L	A	K	L	K	S	T	Y	T	D	K	L	P
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		V	E	Q	R	I	Y	E	L	A	G	Q	E	F	N	I	N	S	P	K	Q	L	G	V	I	L	F	E	K	L	Q	L	P	V	L	K	K	T	K	T	G	.	Y	S	T	S	A	D	V	L	E	K	L	A	P	Y	H	E	I	V	E	N	I	L	H	Y	R	Q	L	G	K	L	Q	S	T	Y	I	E	G	L	L
Template Known Secondary structure											T	S				T	T											T	T	S					S		B		S	S	S	.	B								T	T	T	G	G	G																				T
Template Predicted Secondary structure																																										.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.		.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		L	M	I	N	P	K	T	G	R	V	H	T	S	Y	H	Q	A	V	T	A	T	G	R	L	S	S	T	D	P	N	L	Q	N	I	P	V	R	N	E	E	G	R	R	I	R	Q	A	F	I	A	P	E	D	.	Y	V	I	V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G	L	L
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		K	V	V	R	P	D	T	K	K	V	H	T	I	F	N	Q	A	L	T	Q	T	G	R	L	S	S	T	E	P	N	L	Q	N	I	P	I	R	L	E	E	G	R	K	I	R	Q	A	F	V	P	S	E	S	D	W	L	I	F	A	A	D	Y	S	Q	I	E	L	R	V	L	A	H	I	A	E	D	D	N	L	M
Template Known Secondary structure				S		T	T	T									S	S			S	S	S						S	S		T	T					S	S					G	G	G	G	G				S	S	T	T									S	S											T
Template Predicted Secondary structure
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	F	A	E	G	K	D	I	H	R	A	T	A	A	E	V	F	G	L	P	L	E	T	V	T	S	E	Q	R	R	S	A	K	A	I	N	F	G	L	I	Y	G	M	S	A	F	G	L	A	R	Q	L	N	I	P	R	K	E	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P	G	V	L	E	Y	M	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	F	R	R	D	L	D	I	H	T	K	T	A	M	D	I	F	Q	V	S	E	D	E	V	T	P	N	M	R	R	Q	A	K	A	V	N	F	G	I	V	Y	G	I	S	D	Y	G	L	A	Q	N	L	N	I	S	R	K	E	A	A	E	F	I	E	R	Y	F	E	S	F	P	G	V	K	R	Y	M	E	N
Template Known Secondary structure						T	T													T			G	G	G																														T
Template Predicted Secondary structure
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
		805	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	A	Q	A	K	E	Q	G	Y	V	E	T	L	D	G	R	R	L	Y	L	P	D	I	K	S	S	N	G	A	R	R	A	A	A	E	R	A	A	I	N	A	P	M	Q	G	T	A	A	D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	R	V	R	M	I	M	Q	V	H	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	Q	E	A	K	Q	K	G	Y	V	T	T	L	L	H	R	R	R	Y	L	P	D	I	T	S	R	N	F	N	V	R	S	F	A	E	R	M	A	M	N	T	P	I	Q	G	S	A	A	D	I	I	K	K	A	M	I	D	L	N	A	R	L	K	E	E	R	L	Q	A	H	L	L	L	Q	V	H	D	E	L
Template Known Secondary structure										S					T	T							G	G	G	G		S	S																																						T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	E	V	H	K	D	D	V	D	A	V	A	K	Q	I	H	Q	L	M	E	N	C	T	R	L	D	V	P	L	L	V	E	V	G	S	G	E	N	W	D	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	E	A	P	K	E	E	M	E	R	L	C	R	L	V	P	E	V	M	E	Q	A	V	T	L	R	V	P	L	K	V	D	Y	H	Y	G	S	T	W	Y	D	A
Template Known Secondary structure							G	G	G															S	S			S	S										S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		833	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.