Job Description P00582 Confidence 98.23% Date Thu Jan 5 10:56:46 GMT 2012 Rank 66 Aligned Residues 158 % Identity 24% Template c1d5aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom Resolution 2.40 Å

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		350	.	.	.	.	.	.	.	.				.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420		.	.	.
Predicted Secondary structure											.	.	.																																																					.	.											.
Query SS confidence											.	.	.																																																					.	.											.
Query Sequence		P	V	F	A	F	D	T	E	T	.	.	.	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q	I	S	R	E	R	A	L	E	L	L	K	P	L	L	E	.	.	D	E	K	A	L	K	V	G	Q	N	.	L	K	Y
Query Conservation											.	.	.																																																					.	.											.
Alig confidence											.	.	.																																																					.	.						.					.
Template Conservation																																																																									.
Template Sequence		R	M	L	A	F	D	I	E	T	L	A	H	A	G	A	A	A	G	A	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	W	K	N	I	D	L	P	Y	V	E	S	V	S	T	E	K	E	M	I	K	R	F	L	K	V	I	Q	E	K	D	P	D	V	L	.	I	T	Y	N	G	D	N	F
Template Known Secondary structure												S			S	S		S	S		S										T	T							S	S					T	T					S	S																		S			.			S	S	T	T	T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.
		424	.	.	.	.	.	430					.	.	.	.																							.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.
Predicted Secondary structure									.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																														.	.
Query SS confidence									.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																														.	.
Query Sequence		D	R	G	I	L	A	N	.	.	.	.	Y	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	G	I	.	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	.	.	H	K	T	I	T	F	E
Query Conservation									.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																														.	.
Alig confidence									.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.													.																	.	.
Template Conservation																																																								.
Template Sequence		D	F	A	Y	L	K	K	R	S	E	M	L	G	V	K	F	I	L	G	R	D	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	.	N	L	P	T	Y	T	L	E	T	V	Y	E	P	V	F	G	Q	P	A	E	K	V	Y	A	E
Template Known Secondary structure												T	T	T						S	T	T	S								S	S	S	S						T	T	S														.			S	S											S	S								S	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P
Query Conservation
Alig confidence												.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		E	I	A	E	A	W	A	S	G	E	.	.	.	.	.	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	A	T	Y	E	L	G	K	E	F	F	P
Template Known Secondary structure									S	G	G	.	.	.	.	.	G	G	T	T
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions