Job Description P00582 Confidence 100.00% Date Thu Jan 5 10:56:46 GMT 2012 Rank 1 Aligned Residues 814 % Identity 41% Template c1cmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain Resolution 2.60 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	N	P	L	I	L	V	D	G	S	S	Y	L	Y	R	A	Y	H	A	F	P	P	L	T	N	S	A	G	E	P	T	G	A	M	Y	G	V	L	N	M	L	R	S	L	I	M	Q	Y	K	P	T	H	A	A	V	V	F	D	A	K	G	K	T	F	R	D	E	L	F	E	H	Y	K	S	H	R	P	P	M
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		P	K	G	R	V	L	L	V	D	G	H	H	L	A	Y	R	T	F	H	A	L	K	G	L	T	T	S	R	G	E	P	V	Q	A	V	Y	G	F	A	K	S	L	L	K	A	L	K	E	.	D	G	D	A	V	I	V	V	F	D	A	K	A	P	S	F	R	H	E	A	Y	G	G	Y	K	A	G	R	A	P	T
Template Known Secondary structure											T	T								T	S	S	T	T		B		T	T	S		B																		.			S									S	S	S		T	T	G	G	G	G	S	T	T	T	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	D	L	R	A	Q	I	E	P	L	H	A	M	V	K	A	M	G	L	P	L	L	A	V	S	G	V	E	A	D	D	V	I	G	T	L	A	R	E	A	E	K	A	G	R	P	V	L	I	S	T	G	D	K	D	M	A	Q	L	V	T	P	N	I	T	L	I	N	T	M	T	N	T	I	L	G	P	E	E
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		P	E	D	F	P	R	Q	L	A	L	I	K	E	L	V	D	L	L	G	L	A	R	L	E	V	P	G	Y	E	A	D	D	V	L	A	S	L	A	K	K	A	E	K	E	G	Y	E	V	R	I	L	T	A	D	K	D	L	Y	Q	L	L	S	D	R	I	H	V	L	H	P	.	E	G	Y	L	I	T	P	A	W
Template Known Secondary structure			S	S															T	T							T	T	S																T	T								S	S	G	G	G	G	G	S			S	S						S	.	S	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	N	K	Y	G	V	P	P	E	L	I	I	D	F	L	A	L	M	G	D	S	S	D	N	I	P	G	V	P	G	V	G	E	K	T	A	Q	A	L	L	Q	G	L	G	G	L	D	T	L	Y	A	E	P	E	K	I	A	G	L	S	F	R	G	A	K	T	M	A	A	K	L	E	Q	N	K	E	V	A	Y
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.
Template Sequence		L	W	E	K	Y	G	L	R	P	D	Q	W	A	D	Y	R	A	L	T	G	D	E	S	D	N	L	P	G	V	K	G	I	G	E	K	T	A	R	K	L	L	E	E	W	G	S	L	E	A	L	L	K	N	L	D	R	L	K	P	.	.	.	.	.	.	.	A	I	R	E	K	I	L	A	H	M	D	D	L	K
Template Known Secondary structure					S	S				G	G	G							T	T			S	S	S								S	T	T		T	T	T	T	T	G	G	G	G	G	T	T		S	S	S	S	S						T	.	.	.	.	.	.	.	T	T	T					T	S	T	T	T	T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.								.	.	.	230	.	.	.	.	.	.	.	.	.	240
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Y	Q	L	A	T	I	K	T	D	V	E	L	E	L	T	C	E	Q	L	E	V	Q	Q	P	A	A	E	E	L	L	G	L	F	K	K	Y	E	F	K	R	W	T	A	D	V	E	A	G	K	W	L	Q	A	K	G	A	K	P	A	A	K	P	Q	E	T	S	V	A	D	E	A	P	E	V	T	A	T	V
Query Conservation
Alig confidence																								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	W	D	L	A	K	V	R	T	D	L	P	L	E	V	D	F	A	K	R	R	.	.	E	P	D	R	E	R	L	R	A	F	L	E	R	L	E	F	G	S	L	L	H	E	F	G	L	L	E	S	P	A	L	E	E	A	P	W	P	P	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	G	G	G	G	G				S													.	.														T	T		G	G	G	T	T		S													S	S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	Y	D	N	Y	V	T	I	L	D	E	E	T	L	K	A	W	I	A	K	L	E	K	A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	Q	I	S	R	E	R	A	L	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	F	V	G	F	V	L	S	R	K	E	P	M	W	A	D	L	L	A	L	A	A	A	R	G	.	G	R	V	H	R	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	S		T	T	T											T	.	T						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	K	P	L	L	E	D	E	K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L	.	A	N	Y	G	I	E	L	R	G	I	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T	I	T	F	E	E	I	A	G	K	G	K	N	Q
Query Conservation																										.
Alig confidence		.																								.											.														.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																			.														.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	E	P	Y	K	A	L	R	D	L	K	E	A	R	G	L	L	A	K	D	L	S	V	L	A	L	R	E	G	L	G	L	P	P	G	.	D	D	P	M	L	L	A	Y	L	L	D	P	S	.	.	N	T	T	P	E	G	V	A	R	R	Y	G	G	E	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.										S	S	B		S	T	T											T	T					B		.												T	T	.	.			S								T	S					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																			.														.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	F	N	Q	I	A	L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D	L	Q	K	H	K	G	P	L	N	V	F	E	N	I	E	M	P	L	V	P	V	L	S	R	I	E	R	N	G	V	K	I	D	P	K	V	L	H	N	H	S	E	E	L	T	L	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	E	A	G	E	R	A	A	L	S	E	R	L	F	A	N	L	W	G	R	L	E	G	E	E	R	L	L	W	L	Y	R	E	V	E	R	P	L	S	A	V	L	A	H	M	E	A	T	G	V	R	L	D	V	A	Y	L	R	A	L	S	L	E	V	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S																					T	T											T																B		B													.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Template SS confidence
														400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.		.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	E	L	E	K	K	A	H	E	I	A	G	E	E	F	N	L	S	S	T	K	Q	L	Q	T	I	L	F	E	K	Q	G	I	K	P	L	K	K	T	.	P	G	G	A	P	S	T	S	E	E	V	L	E	E	L	A	L	D	Y	P	L	P	K	V	I	L	E	Y	R	G	L	A	K	L	K	S	T	Y	T	D
Query Conservation																																									.
Alig confidence		.																																							.
Template Conservation		.
Template Sequence		.	A	L	E	A	E	V	F	R	L	A	G	H	P	F	N	L	N	S	R	D	Q	L	E	R	V	L	F	D	E	L	G	L	P	A	I	G	K	T	E	K	T	G	K	R	S	T	S	A	A	V	L	E	A	L	R	E	A	H	P	I	V	E	K	I	L	Q	Y	R	E	L	T	K	L	K	S	T	Y	I	D
Template Known Secondary structure		.									T	T	S	S				T	T												S								S	S	S		S	S					T	T	T	T	T	T	T	T	T	T	T		S																			T	S
Template Predicted Secondary structure		.
Template SS confidence
			464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	P	L	M	I	N	P	K	T	G	R	V	H	T	S	Y	H	Q	A	V	T	A	T	G	R	L	S	S	T	D	P	N	L	Q	N	I	P	V	R	N	E	E	G	R	R	I	R	Q	A	F	I	A	P	E	D	Y	V	I	V	S	A	D	Y	S	Q	I	E	L	R	I	M	A	H	L	S	R	D	K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	P	D	L	I	H	P	R	T	G	R	L	H	T	R	F	N	Q	T	A	T	A	T	G	R	L	S	S	S	D	P	N	L	Q	N	I	P	V	R	T	P	L	G	Q	R	I	R	R	A	F	I	A	E	E	G	W	L	L	V	A	L	D	Y	S	Q	I	E	L	R	V	L	A	H	L	S	G	D	E	N
Template Known Secondary structure		S	T	T	T	S	B		T	T	T		S	B						S	S	S		S	S	S						S	S		G	G	G	S		T	T	S									T	B	B			T	T									T	T											T
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	A	F	A	E	G	K	D	I	H	R	A	T	A	A	E	V	F	G	L	P	L	E	T	V	T	S	E	Q	R	R	S	A	K	A	I	N	F	G	L	I	Y	G	M	S	A	F	G	L	A	R	Q	L	N	I	P	R	K	E	A	Q	K	Y	M	D	L	Y	F	E	R	Y	P	G	V	L	E	Y	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	R	V	F	Q	E	G	R	D	I	H	T	E	T	A	S	W	M	F	G	V	P	R	E	A	V	D	P	L	M	R	R	A	A	K	T	I	N	F	G	V	L	Y	G	M	S	A	H	R	L	S	Q	E	L	A	I	P	Y	E	E	A	Q	A	F	I	E	R	Y	F	Q	S	F	P	K	V	R	A	W	I
Template Known Secondary structure									T													T			G	G	G																T	T	S											S	S
Template Predicted Secondary structure
Template SS confidence
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	T	R	A	Q	A	K	E	Q	G	Y	V	E	T	L	D	G	R	R	L	Y	L	P	D	I	K	S	S	N	G	A	R	R	A	A	A	E	R	A	A	I	N	A	P	M	Q	G	T	A	A	D	I	I	K	R	A	M	I	A	V	D	A	W	L	Q	A	E	Q	P	R	V	R	M	I	M	Q	V	H	D
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		E	K	T	L	E	E	G	R	R	R	G	Y	V	E	T	L	F	G	R	R	R	Y	V	P	D	L	E	A	R	V	K	S	V	R	E	A	A	E	R	M	A	F	N	M	P	V	Q	G	T	A	A	D	L	M	K	L	A	M	V	K	L	F	P	R	L	E	E	.	.	M	G	A	R	M	L	L	Q	V	H	D
Template Known Secondary structure											T	S	B				S	S					B		G	G	G	G		S	S												T	T																									.	.	T	T								T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.			.	.	.	.	.	780	.	.	.	.	.
		883	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	V	F	E	V	H	K	D	D	V	D	A	V	A	K	Q	I	H	Q	L	M	E	N	C	T	R	L	D	V	P	L	L	V	E	V	G	S	G	E	N	W	D	Q	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	V	L	E	A	P	K	E	R	A	E	A	V	A	R	L	A	K	E	V	M	E	G	V	Y	P	L	A	V	P	L	E	V	E	V	G	I	G	E	D	W	L	S	A	K
Template Known Secondary structure									T	T	T														T	S	S			S	S										S	B
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.