Job Description P37610 Confidence 97.87% Date Thu Jan 5 11:55:45 GMT 2012 Rank 13 Aligned Residues 178 % Identity 19% Template c2opwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	L	S	D	N	Q	F	E	Q	L	Y	H	A	V	L	R	H	Q	V	V	F	L	R	D	Q	A	I	T	P	Q	Q	Q	R	A	L	A	Q	R	F	G	E	L	H	I	H	P	V	Y	P	H	A	E	G	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.													.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.													.
Template Sequence		A	C	L	S	P	S	Q	L	Q	K	.	.	.	.	F	Q	Q	D	G	F	L	V	L	E	G	F	.	L	S	A	E	E	C	V	A	M	Q	Q	R	I	G	E	I	V	A	E	M	D	V	P	L	H	C	R	T	E	F	S	T	Q	E	E	E	Q	L	R	A	Q	G	S	T	D	Y	F	L	S	S	G	D	K
Template Known Secondary structure												.	.	.	.					S					T	T	S	.	S																		T					G	G	G	S	S				S																	T	T	T	T	S
Template Predicted Secondary structure												.	.	.	.													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
																																																																82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	V	L	D	T	H	N	D	N	P	P	D	N	D	N	W	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	F	F	F	E	K	G	V	F	D	E	K	G	N	F	L	V	P	P	E	K	S	I	N	K	I	G	H	A	L	H	A	H	D	P	V	F	K	S	I	T	H	S	F	K	V	Q	T	L	A	R	S	L	G	L	Q	M	P	V	V	V	Q	S	M	Y	I	F	K	Q	P	H	F	G	G	E	V	S	P	H
Template Known Secondary structure								T	T	S	B		T	T	S		B	S	S		G	G	G	S																				T												T		S	S													T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		T	D	V	T	F	I	E	T	P	P	A	G	A	I	L	A	A	K	E	L	.	.	.	.	P	S	T	G	G	D	T	L	W	T	S	G	I	A	A	Y	E	A	L	S	V	P	F	R	Q	L	L	S	G	L	R	A	E	H	D	F	R	K	S	F	P	E	Y	K	Y	R	K	T	E	E	E	H	Q	R	W	R
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	A	S	F	L	Y	T	E	P	L	G	R	V	L	G	V	W	I	A	V	E	D	A	T	L	E	N	G	C	L	W	F	I	P	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	T	S				S	S	S									S	S		B		T	T	T	T						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	A	K	N	P	P	L	L	H	P	V	V	R	T	H	P	V	S	G	K	Q	A	L	F	V	N	E	G	F	T	T	R	I	V	D	V	S	E	K	E	S	E	A	L	L	S	F	L	F	A	H	I	T	K	P	E	F	Q	V	R	W	R	W	Q	P	N	D	I	A	I	W	D	N	R	V	T	Q	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	S	G	V	S	R	R	M	V	R	A	P	P	G	T	S	F	L	G	S	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	D	N	S	L	F	V	P	T	P	V	Q	R	G	A	L	V	L	I	H	G	E	.	V	V	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S			S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G						B		T	T							T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
																		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.															.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		Y	A	N	A	D	Y	L	P	Q	R	R	I	M	H	R	A	T	I	L	.	G	D	K	P	F	Y	R
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		K	S	K	Q	N	L	S	D	R	S	R	Q	A	Y	T	F	H	L	M	E	A	S	G	T	T	W	S
Template Known Secondary structure						B		S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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