Job Description P03959 Confidence 100.00% Date Thu Jan 5 10:58:06 GMT 2012 Rank 1 Aligned Residues 442 % Identity 14% Template c3pjzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:potassium uptake protein trkh; PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus Resolution 3.51 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		M	A	A	Q	G	F	L	L	I	A	T	F	L	L	V	L	M	V	L	A	R	P	L	G	S	G	L	A	R	L	I	N	D	I	P	L	.	.	.	.	.	.	.	P	G	T	T	G	V	E	R	V	L	F	R	A	L	G	V	S	D	R	E	M	N	W	K	Q	Y	L	C	A	I	L	G	L	N	M	L	G
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		M	Q	F	R	S	I	I	R	I	V	G	L	L	L	A	L	F	S	V	T	M	L	A	P	A	L	V	A	L	L	Y	R	D	G	A	G	V	P	F	V	T	T	F	F	V	L	L	F	C	G	A	M	C	W	F	P	N	R	R	H	K	H	E	L	K	S	R	D	.	.	.	.	.	.	.	.	G	F	L	I
Template Known Secondary structure																				T	T	T					T					S	S																			T	T	T	S	T	T	T												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	L	F	F	M	L	L	G	Q	H	Y	L	P	L	N	P	Q	Q	L	P	G	L	S	W	D	L	A	L	N	T	A	V	S	F	V	T	N	T	N	W	Q	S	Y	S	G	E	T	T	L	S	Y	F	S	Q	M	A	G	L	T	V	Q	N	F	L	S	A	A	S	G	I	A	V	I	F	A	L	I	R
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		V	V	L	F	W	T	V	L	G	S	A	G	S	L	P	F	L	I	A	D	N	P	N	I	S	V	T	D	A	F	F	E	S	F	S	A	L	T	T	T	G	A	T	V	I	V	G	L	D	E	L	P	K	A	I	.	.	.	.	L	F	Y	R	Q	F	L	Q	W	F	G	G	M	G	I	I	V	L	A	V	A
Template Known Secondary structure																						S	S																T	T										S	S	S					.	.	.	.																	T	T	T	T	S
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	R	Q	S	M	S	T	L	G	N	A	W	V	D	L	L	R	I	T	L	W	V	L	V	P	V	A	L	L	I	A	L	F	F	I	Q	Q	G	A	L	Q	N	F	L	P	Y	Q	A	V	N	T	V	E	G	A	Q	Q	L	L	P	M	G	P	V	A	S	Q	E	A	I	K	M	L	G	T	N	G	G
Query Conservation
Alig confidence																																											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	P	V	L	G	I	G	G	M	T	P	R	I	A	E	T	A	K	A	L	W	Y	I	Y	L	S	L	T	I	A	C	A	V	A	F	W	L	A	G	M	.	.	.	.	.	.	T	P	F	D	A	I	S	H	S	F	S	T	I	A	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T	T	T	S						S	S	S																										T		.	.	.	.	.	.		S					T	T	T					T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		G	F	F	N	A	N	S	S	H	P	F	E	N	P	T	A	L	T	N	F	V	Q	M	L	A	I	F	L	I	P	T	A	L	C	F	A	F	G	E	V	M	G	D	R	R	Q	G	R	M	.	.	.	.	L	L	W	A	M	S	V	I	F	V	I	C	V	G	V	V	M	W	A	E	V	Q	G	N	P	H	L
Query Conservation																																																			.	.	.	.
Alig confidence		.	.																																																.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	F	S	T	H	D	A	S	M	G	Y	F	D	S	Y	A	I	N	L	I	T	V	V	F	L	L	I	S	A	C	N	F	T	L	H	F	A	A	F	A	S	G	G	V	H	P	K	Y	Y	W	K	D	P	E	F	R	A	F	I	F	I	Q	V	L	L	F	L	V	C	F	L	L	L	L	K	H	H	S	Y
Template Known Secondary structure		.	.			S	S	T	T	G	G	G	S	S			T	T													T	S									T	T	T	S	T	T							T	S																								T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	G	T	D	S	S	I	N	M	E	G	K	E	S	R	F	G	V	L	V	S	S	L	F	A	V	V	T	T	A	A	S	C	G	A	V	I	A	M	H	D	S	F	T	A	L	G	G	M	V	P	M	W	L	M	Q	I	G	E	V	V	F	G	G	V	G	S	G	L	Y	G	M	M	L	F	V	L	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Sequence		T	S	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	F	D	Q	A	L	F	Q	T	V	S	I	S	T	T	A	G	F	T	T	T	G	F	A	D	W	P	L	F	L	P	V	L	L	L	F	S	S	F	I	G	.	G	C	A	G	S	T	G	G	G	M	K	V	I	R	I	L	L	L	T
Template Known Secondary structure		S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T	T					S				S	S			T										T	T	S		.	S		T	T	S	S			S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template SS confidence
		301	.	.	.															.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		390	.	.	.	.	.	.	.						.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		A	V	F	I	A	G	L	M	.	.	.	.	.	I	G	R	T	P	E	Y	L	G	K	K	I	D	V	R	E	M	K	L	T	A	L	A	I	L	V	T	P	T	L	V	L	M	G	A	A	L	A	M	M	T	D	A	G	R	S	A	M	L	N	P	G	P	H	G	F	S	E	V	L	Y	A	V	S	S	A	A
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	G	A	R	E	L	K	R	L	V	H	P	R	A	V	Y	T	I	K	V	G	G	S	A	L	P	Q	R	V	V	D	A	V	W	G	F	F	S	A	Y	A	L	V	F	V	V	C	M	L	G	L	I	A	T	G	M	D	.	.	.	.	.	.	.	.	.	.	E	L	S	A	F	S	A	V	A	A	T	L
Template Known Secondary structure														S	S	S						S	S	S				T	T	T																											S	S		.	.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.											.	.	.	.	.	.	430	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.					.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		N	N	N	G	S	A	F	A	G	L	.	.	.	.	S	A	N	S	P	F	W	N	C	L	L	A	F	C	M	F	V	G	R	F	G	V	I	I	P	V	M	A	I
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		N	N	L	G	P	G	L	G	E	V	A	L	H	F	G	D	V	N	D	K	A	K	W	V	L	I	V	S	M	L	F	G	R	L	E	I	F	T	L	L	I	L	L
Template Known Secondary structure		T	T			S			S	S	S					S	S	S																	T	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.